Protein–RNA interactions for Protein: P25655

CDC39, General negative regulator of transcription subunit 1, yeastyeast

Known RBP Predictions only

Length 2,108 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC39P25655 YML009W-BYML009W-B 477 nt17.96■□□□□ 0.47
CDC39P25655 NSR1YGR159C 1245 nt17.43■□□□□ 0.38
CDC39P25655 NOP1YDL014W 984 nt17.12■□□□□ 0.33
CDC39P25655 YKL036CYKL036C 393 nt16.46■□□□□ 0.23
CDC39P25655 MDJ1YFL016C 1536 nt15.73■□□□□ 0.11
CDC39P25655 SRX1YKL086W 384 nt15.62■□□□□ 0.09
CDC39P25655 Q0297Q0297 156 nt15.47■□□□□ 0.07
CDC39P25655 YJL027CYJL027C 417 nt15.38■□□□□ 0.05
CDC39P25655 SCS3YGL126W 1143 nt15.29■□□□□ 0.04
CDC39P25655 YCR051WYCR051W 669 nt14.55□□□□□ -0.08
CDC39P25655 YOL085CYOL085C 342 nt14.14□□□□□ -0.15
CDC39P25655 PKP1YIL042C 1185 nt14.08□□□□□ -0.16
CDC39P25655 DBP2YNL112W 1641 nt14.02□□□□□ -0.16
CDC39P25655 TRN1tP(UGG)A 72 nt13.85□□□□□ -0.19
CDC39P25655 SUF9tP(UGG)F 72 nt13.85□□□□□ -0.19
CDC39P25655 SUF8tP(UGG)H 72 nt13.85□□□□□ -0.19
CDC39P25655 tP(UGG)LtP(UGG)L 72 nt13.85□□□□□ -0.19
CDC39P25655 SUF7tP(UGG)M 72 nt13.85□□□□□ -0.19
CDC39P25655 tP(UGG)N1tP(UGG)N1 72 nt13.85□□□□□ -0.19
CDC39P25655 tP(UGG)N2tP(UGG)N2 72 nt13.85□□□□□ -0.19
CDC39P25655 tP(UGG)O1tP(UGG)O1 72 nt13.85□□□□□ -0.19
CDC39P25655 SUF11tP(UGG)O2 72 nt13.85□□□□□ -0.19
CDC39P25655 SCJ1YMR214W 1134 nt13.77□□□□□ -0.21
CDC39P25655 RPP1BYDL130W 321 nt13.68□□□□□ -0.22
CDC39P25655 ATS1YAL020C 1002 nt13.64□□□□□ -0.23
CDC39P25655 CCC1YLR220W 969 nt13.51□□□□□ -0.25
CDC39P25655 YBR190WYBR190W 312 nt13.28□□□□□ -0.28
CDC39P25655 PET122YER153C 765 nt13.17□□□□□ -0.3
CDC39P25655 SCR1SCR1 522 nt13.1□□□□□ -0.31
CDC39P25655 tP(UGG)O3tP(UGG)O3 72 nt13.05□□□□□ -0.32
CDC39P25655 RVS167YDR388W 1449 nt13.02□□□□□ -0.32
CDC39P25655 RRN5YLR141W 1092 nt12.99□□□□□ -0.33
CDC39P25655 RTC3YHR087W 336 nt12.86□□□□□ -0.35
CDC39P25655 RSB1YOR049C 1065 nt12.77□□□□□ -0.36
CDC39P25655 YER088W-BYER088W-B 147 nt12.68□□□□□ -0.38
CDC39P25655 PST2YDR032C 597 nt12.64□□□□□ -0.39
CDC39P25655 SHR5YOL110W 714 nt12.52□□□□□ -0.41
CDC39P25655 YDJ1YNL064C 1230 nt12.49□□□□□ -0.41
CDC39P25655 GAR1YHR089C 618 nt12.35□□□□□ -0.43
CDC39P25655 DEP1YAL013W 1218 nt12.32□□□□□ -0.44
CDC39P25655 URN1YPR152C 1398 nt12.31□□□□□ -0.44
CDC39P25655 YKL097CYKL097C 411 nt12.29□□□□□ -0.44
CDC39P25655 PUT4YOR348C 1884 nt12.26□□□□□ -0.45
CDC39P25655 ARE1YCR048W 1833 nt12.23□□□□□ -0.45
CDC39P25655 SAH1YER043C 1350 nt12.11□□□□□ -0.47
CDC39P25655 OPI9YLR338W 858 nt12.09□□□□□ -0.47
CDC39P25655 SHU1YHL006C 453 nt12.03□□□□□ -0.48
CDC39P25655 YOR139CYOR139C 393 nt12□□□□□ -0.49
CDC39P25655 YHR049C-AYHR049C-A 297 nt11.99□□□□□ -0.49
CDC39P25655 YAL037C-BYAL037C-B 975 nt11.97□□□□□ -0.49
CDC39P25655 POA1YBR022W 534 nt11.87□□□□□ -0.51
CDC39P25655 YNL208WYNL208W 600 nt11.84□□□□□ -0.51
CDC39P25655 SSA3YBL075C 1950 nt11.82□□□□□ -0.52
CDC39P25655 RPN10YHR200W 807 nt11.8□□□□□ -0.52
CDC39P25655 SSA1YAL005C 1929 nt11.77□□□□□ -0.53
CDC39P25655 SRB2YHR041C 633 nt11.76□□□□□ -0.53
CDC39P25655 TIR1YER011W 765 nt11.73□□□□□ -0.53
CDC39P25655 YJR018WYJR018W 363 nt11.72□□□□□ -0.53
CDC39P25655 PUN1YLR414C 792 nt11.71□□□□□ -0.53
CDC39P25655 BUD23YCR047C 828 nt11.68□□□□□ -0.54
CDC39P25655 BSC6YOL137W 1494 nt11.67□□□□□ -0.54
CDC39P25655 YJR120WYJR120W 351 nt11.66□□□□□ -0.54
CDC39P25655 PTC2YER089C 1395 nt11.59□□□□□ -0.55
CDC39P25655 WWM1YFL010C 636 nt11.57□□□□□ -0.56
CDC39P25655 NPL3YDR432W 1245 nt11.53□□□□□ -0.56
CDC39P25655 NAB2YGL122C 1578 nt11.46□□□□□ -0.57
CDC39P25655 MNP1YGL068W 585 nt11.45□□□□□ -0.58
CDC39P25655 HOM6YJR139C 1080 nt11.45□□□□□ -0.58
CDC39P25655 FIS1YIL065C 468 nt11.35□□□□□ -0.59
CDC39P25655 YGR021WYGR021W 873 nt11.33□□□□□ -0.6
CDC39P25655 RPP2BYDR382W 333 nt11.29□□□□□ -0.6
CDC39P25655 YOL037CYOL037C 354 nt11.27□□□□□ -0.6
CDC39P25655 SPT5YML010W 3192 nt11.27□□□□□ -0.6
CDC39P25655 tM(CAU)CtM(CAU)C 72 nt11.24□□□□□ -0.61
CDC39P25655 IMT4tM(CAU)E 72 nt11.24□□□□□ -0.61
CDC39P25655 IMT3tM(CAU)J3 72 nt11.24□□□□□ -0.61
CDC39P25655 IMT1tM(CAU)O1 72 nt11.24□□□□□ -0.61
CDC39P25655 IMT2tM(CAU)P 72 nt11.24□□□□□ -0.61
CDC39P25655 YFL021C-AYFL021C-A 855 nt11.23□□□□□ -0.61
CDC39P25655 PHO4YFR034C 939 nt11.21□□□□□ -0.61
CDC39P25655 BDH2YAL061W 1254 nt11.2□□□□□ -0.62
CDC39P25655 DAL1YIR027C 1383 nt11.13□□□□□ -0.63
CDC39P25655 YPR011CYPR011C 981 nt11.12□□□□□ -0.63
CDC39P25655 INM2YDR287W 879 nt11.12□□□□□ -0.63
CDC39P25655 PUS2YGL063W 1113 nt11.09□□□□□ -0.63
CDC39P25655 FPR4YLR449W 1179 nt11.09□□□□□ -0.63
CDC39P25655 YPS1YLR120C 1710 nt11.09□□□□□ -0.63
CDC39P25655 YBL100CYBL100C 315 nt11.08□□□□□ -0.64
CDC39P25655 WHI5YOR083W 888 nt11.07□□□□□ -0.64
CDC39P25655 TRM9YML014W 840 nt11.06□□□□□ -0.64
CDC39P25655 YLR281CYLR281C 468 nt11.05□□□□□ -0.64
CDC39P25655 RKM5YLR137W 1104 nt11.03□□□□□ -0.64
CDC39P25655 YDR095CYDR095C 411 nt11□□□□□ -0.65
CDC39P25655 YLR236CYLR236C 324 nt10.91□□□□□ -0.66
CDC39P25655 LSM3YLR438C-A 270 nt10.9□□□□□ -0.67
CDC39P25655 MEP2YNL142W 1500 nt10.88□□□□□ -0.67
CDC39P25655 DCW1YKL046C 1350 nt10.85□□□□□ -0.67
CDC39P25655 MOT3YMR070W 1473 nt10.85□□□□□ -0.67
CDC39P25655 SSA4YER103W 1929 nt10.85□□□□□ -0.67
CDC39P25655 CCT6YDR188W 1641 nt10.82□□□□□ -0.68
Retrieved 100 of 7,029 protein–RNA pairs in 12.9 ms