RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W CUE4Q04201 117 aaPredicted RBP2.33□□□□□ -2.04
VPS28YPL065W YLR031WQ07978 186 aa2.33□□□□□ -2.04
VPS28YPL065W YML100W-AQ8TGT0 57 aa2.33□□□□□ -2.04
VPS28YPL065W RPL2AP0CX45 254 aaKnown RBP2.32□□□□□ -2.04
VPS28YPL065W RPL2BP0CX46 254 aaKnown RBP2.32□□□□□ -2.04
VPS28YPL065W SEC11P15367 167 aa2.32□□□□□ -2.04
VPS28YPL065W FMP23P38231 175 aa2.32□□□□□ -2.04
VPS28YPL065W YBR220CP38318 560 aa2.32□□□□□ -2.04
VPS28YPL065W RPL13BP40212 199 aaKnown RBP2.32□□□□□ -2.04
VPS28YPL065W NRK1P53915 240 aa2.32□□□□□ -2.04
VPS28YPL065W YLR036CQ07986 203 aa2.32□□□□□ -2.04
VPS28YPL065W RPL13AQ12690 199 aaPredicted RBP2.32□□□□□ -2.04
VPS28YPL065W CYR1P08678 2026 aaKnown RBP2.32□□□□□ -2.04
VPS28YPL065W YAR023CD6VPM8 179 aa2.31□□□□□ -2.04
VPS28YPL065W SHG1P38337 142 aa2.31□□□□□ -2.04
VPS28YPL065W YER134CP40081 178 aa2.31□□□□□ -2.04
VPS28YPL065W DYN3Q04949 312 aa2.31□□□□□ -2.04
VPS28YPL065W QCR8P08525 94 aa2.3□□□□□ -2.04
VPS28YPL065W UPS2P35200 230 aa2.3□□□□□ -2.04
VPS28YPL065W NAT3Q06504 195 aa2.3□□□□□ -2.04
VPS28YPL065W BRX1Q08235 291 aaKnown RBP2.3□□□□□ -2.04
VPS28YPL065W GCY1P14065 312 aaKnown RBP RIP-Chip data2.29□□□□□ -2.04not detected
VPS28YPL065W YER034WP40022 185 aaKnown RBP2.29□□□□□ -2.04
VPS28YPL065W TDA4P47153 279 aa2.29□□□□□ -2.04
VPS28YPL065W YDL085C-AQ3E7B7 68 aaKnown RBP2.29□□□□□ -2.04
VPS28YPL065W GPA2P10823 449 aa2.28□□□□□ -2.04
VPS28YPL065W YKR041WP36134 250 aa2.28□□□□□ -2.04
VPS28YPL065W MTW1P39731 289 aa2.28□□□□□ -2.04
VPS28YPL065W AIM34Q03673 198 aa2.28□□□□□ -2.04
VPS28YPL065W FPR1P20081 114 aaKnown RBP2.27□□□□□ -2.05
VPS28YPL065W SEC72P39742 193 aaKnown RBP2.27□□□□□ -2.05
VPS28YPL065W YPL073CP40323 161 aa2.27□□□□□ -2.05
VPS28YPL065W YMR315WQ04869 349 aaKnown RBP2.27□□□□□ -2.05
VPS28YPL065W IRC23Q08416 157 aa2.27□□□□□ -2.05
VPS28YPL065W YDL180WQ12301 547 aa2.27□□□□□ -2.05
VPS28YPL065W RPS24AP0CX31 135 aaKnown RBP2.26□□□□□ -2.05
VPS28YPL065W RPS24BP0CX32 135 aaKnown RBP2.26□□□□□ -2.05
VPS28YPL065W POG1P40473 351 aa2.26□□□□□ -2.05
VPS28YPL065W YFL019CP43576 117 aa2.26□□□□□ -2.05
VPS28YPL065W PGA1P53896 198 aa2.26□□□□□ -2.05
VPS28YPL065W YMR295CQ03559 197 aa2.26□□□□□ -2.05
VPS28YPL065W YET3Q07451 203 aa2.26□□□□□ -2.05
VPS28YPL065W UBR2Q07963 1872 aa2.26□□□□□ -2.05
VPS28YPL065W AHC2P25649 128 aa2.25□□□□□ -2.05
VPS28YPL065W MGT1P26188 188 aa2.25□□□□□ -2.05
VPS28YPL065W SAC3P46674 1301 aa2.24□□□□□ -2.05
VPS28YPL065W TIR1P10863 254 aa2.24□□□□□ -2.05
VPS28YPL065W NSP1P14907 823 aaKnown RBP2.24□□□□□ -2.05
VPS28YPL065W PAM17P36147 197 aa2.24□□□□□ -2.05
VPS28YPL065W TVP38P36164 337 aa2.24□□□□□ -2.05
VPS28YPL065W TMA22P47089 198 aaPredicted RBP2.24□□□□□ -2.05
VPS28YPL065W SHH3Q04487 196 aa2.24□□□□□ -2.05
VPS28YPL065W YPR174CQ06616 221 aaPredicted RBP2.24□□□□□ -2.05
VPS28YPL065W YPR014CQ6B0W2 109 aa2.24□□□□□ -2.05
VPS28YPL065W FAS1P07149 2051 aaKnown RBP2.23□□□□□ -2.05
VPS28YPL065W YIP3P53633 176 aa2.23□□□□□ -2.05
VPS28YPL065W VPS71Q03433 280 aa2.23□□□□□ -2.05
VPS28YPL065W RNH202Q05635 350 aa2.23□□□□□ -2.05
VPS28YPL065W YOR342CQ12182 319 aa2.23□□□□□ -2.05
VPS28YPL065W CLG1P35190 452 aa2.22□□□□□ -2.05
VPS28YPL065W EGD2P38879 174 aaKnown RBP2.22□□□□□ -2.05
VPS28YPL065W YER076CP40049 302 aa2.22□□□□□ -2.05
VPS28YPL065W FMP32P43557 207 aa2.22□□□□□ -2.05
VPS28YPL065W GPI14P47088 403 aaKnown RBP2.22□□□□□ -2.05
VPS28YPL065W DIG2Q03373 323 aaKnown RBP2.22□□□□□ -2.05
VPS28YPL065W YMR253CQ04835 414 aa2.22□□□□□ -2.05
VPS28YPL065W SHH4Q06236 168 aa2.22□□□□□ -2.05
VPS28YPL065W FYV12Q08559 129 aa2.22□□□□□ -2.05
VPS28YPL065W MPD1Q12404 318 aaKnown RBP2.22□□□□□ -2.05
VPS28YPL065W MSB2P32334 1306 aa2.21□□□□□ -2.06
VPS28YPL065W PHO85P17157 305 aa2.21□□□□□ -2.06
VPS28YPL065W YHL018WP38744 120 aaPredicted RBP2.21□□□□□ -2.06
VPS28YPL065W NVJ1P38881 321 aa2.21□□□□□ -2.06
VPS28YPL065W CUP9P41817 306 aa2.21□□□□□ -2.06
VPS28YPL065W MZM1Q03429 123 aaPredicted RBP2.21□□□□□ -2.06
VPS28YPL065W YHR007C-AQ07074 71 aa2.21□□□□□ -2.06
VPS28YPL065W TRR1P29509 319 aaKnown RBP2.2□□□□□ -2.06
VPS28YPL065W YKL102CP34249 101 aa2.2□□□□□ -2.06
VPS28YPL065W NSG1P38837 291 aa2.2□□□□□ -2.06
VPS28YPL065W SPC25P40014 221 aa2.2□□□□□ -2.06
VPS28YPL065W YNL033WP53964 284 aa2.2□□□□□ -2.06
VPS28YPL065W GPI17Q04080 534 aa2.2□□□□□ -2.06
VPS28YPL065W YPR013CQ12145 317 aa2.2□□□□□ -2.06
VPS28YPL065W MDM35O60200 86 aa2.19□□□□□ -2.06
VPS28YPL065W ARO7P32178 256 aa2.19□□□□□ -2.06
VPS28YPL065W ECM4P36156 370 aa2.19□□□□□ -2.06
VPS28YPL065W SRP14P38985 146 aa2.19□□□□□ -2.06
VPS28YPL065W MPA43P53583 542 aaPredicted RBP2.19□□□□□ -2.06
VPS28YPL065W PRP11Q07350 266 aaPredicted RBP2.19□□□□□ -2.06
VPS28YPL065W YNL146C-AQ3E7Z1 64 aa2.19□□□□□ -2.06
VPS28YPL065W IDP1P21954 428 aaKnown RBP2.18□□□□□ -2.06
VPS28YPL065W JAC1P53193 184 aa2.18□□□□□ -2.06
VPS28YPL065W YNL247WP53852 767 aaKnown RBP2.18□□□□□ -2.06
VPS28YPL065W YLR460CP54007 376 aa2.18□□□□□ -2.06
VPS28YPL065W FIT2Q08906 153 aa2.18□□□□□ -2.06
VPS28YPL065W DGK1Q12382 290 aa2.18□□□□□ -2.06
VPS28YPL065W YLR412C-AQ3E742 68 aa2.18□□□□□ -2.06
VPS28YPL065W COX8P04039 78 aa2.17□□□□□ -2.06
VPS28YPL065W RPL35AP0CX84 120 aaKnown RBP2.17□□□□□ -2.06
VPS28YPL065W RPL35BP0CX85 120 aaKnown RBP2.17□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 71.2 ms