RNA–Protein interactions for RNA: YER111C

SWI4, Transcript of DNA binding component of the SBF complex (Swi4p-Swi6p), yeast

Gene SWI4, Length 3,282 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI4	YER111C	SCO1	P23833	295 aa		0.87	□□□□□ -2.27
SWI4	YER111C	MIG1	P27705	504 aa		0.87	□□□□□ -2.27
SWI4	YER111C	SNX4	P47057	423 aa		0.87	□□□□□ -2.27
SWI4	YER111C	YGL088W	P53151	121 aa		0.87	□□□□□ -2.27
SWI4	YER111C	NRK1	P53915	240 aa		0.87	□□□□□ -2.27
SWI4	YER111C	SLM2	P53955	656 aa		0.87	□□□□□ -2.27
SWI4	YER111C	MIX17	Q03667	156 aa		0.87	□□□□□ -2.27
SWI4	YER111C	Q0255	P03881	472 aa		0.87	□□□□□ -2.27
SWI4	YER111C	CDC7	P06243	507 aa		0.87	□□□□□ -2.27
SWI4	YER111C	SGA1	P08019	549 aa		0.87	□□□□□ -2.27
SWI4	YER111C	CUP1-1	P0CX80	61 aa		0.87	□□□□□ -2.27
SWI4	YER111C	CUP1-2	P0CX81	61 aa		0.87	□□□□□ -2.27
SWI4	YER111C	TRR1	P29509	319 aa	Known RBP	0.87	□□□□□ -2.27
SWI4	YER111C	AVT2	P39981	480 aa		0.87	□□□□□ -2.27
SWI4	YER111C	YER084W	P40057	128 aa		0.87	□□□□□ -2.27
SWI4	YER111C	ERG10	P41338	398 aa	Known RBP	0.87	□□□□□ -2.27
SWI4	YER111C	EAF6	P47128	113 aa		0.87	□□□□□ -2.27
SWI4	YER111C	PEX12	Q04370	399 aa		0.87	□□□□□ -2.27
SWI4	YER111C	GGA1	Q06336	557 aa		0.87	□□□□□ -2.27
SWI4	YER111C	YDL012C	Q12489	107 aa		0.87	□□□□□ -2.27
SWI4	YER111C	TIM9	O74700	87 aa		0.86	□□□□□ -2.27
SWI4	YER111C	BET1	P22804	142 aa		0.86	□□□□□ -2.27
SWI4	YER111C	RSA4	P25382	515 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	AGA2	P32781	87 aa		0.86	□□□□□ -2.27
SWI4	YER111C	YGL235W	P53071	178 aa		0.86	□□□□□ -2.27
SWI4	YER111C	RSM10	Q03201	203 aa		0.86	□□□□□ -2.27
SWI4	YER111C	AIM34	Q03673	198 aa		0.86	□□□□□ -2.27
SWI4	YER111C	SMD2	Q06217	110 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	YOL014W	Q08110	124 aa		0.86	□□□□□ -2.27
SWI4	YER111C	SNF4	P12904	322 aa		0.86	□□□□□ -2.27
SWI4	YER111C	SEC14	P24280	304 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	YER076C	P40049	302 aa		0.86	□□□□□ -2.27
SWI4	YER111C	YGR050C	P53231	118 aa		0.86	□□□□□ -2.27
SWI4	YER111C	COG5	P53951	403 aa		0.86	□□□□□ -2.27
SWI4	YER111C	YNL010W	P53981	241 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	DGA1	Q08650	418 aa		0.86	□□□□□ -2.27
SWI4	YER111C	YOR268C	Q08734	132 aa		0.86	□□□□□ -2.27
SWI4	YER111C	FEX1	Q08913	375 aa		0.86	□□□□□ -2.27
SWI4	YER111C	FEX2	Q08991	375 aa		0.86	□□□□□ -2.27
SWI4	YER111C	YPR014C	Q6B0W2	109 aa		0.86	□□□□□ -2.27
SWI4	YER111C	URA5	P13298	226 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	MAG1	P22134	296 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	UTP30	P36144	274 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	MED6	P38782	295 aa		0.86	□□□□□ -2.27
SWI4	YER111C	YFH7	P43591	353 aa		0.86	□□□□□ -2.27
SWI4	YER111C	RPA43	P46669	326 aa		0.86	□□□□□ -2.27
SWI4	YER111C	MNN5	P46982	586 aa		0.86	□□□□□ -2.27
SWI4	YER111C	CIS3	P47001	227 aa		0.86	□□□□□ -2.27
SWI4	YER111C	ARO8	P53090	500 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	YNL184C	P53876	108 aa		0.86	□□□□□ -2.27
SWI4	YER111C	YLR460C	P54007	376 aa		0.86	□□□□□ -2.27
SWI4	YER111C	AKR2	Q12013	749 aa		0.86	□□□□□ -2.27
SWI4	YER111C	ADE6	P38972	1358 aa	Known RBP	0.86	□□□□□ -2.27
SWI4	YER111C	SEC4	P07560	215 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	YHL026C	P38740	315 aa		0.85	□□□□□ -2.27
SWI4	YER111C	IRC22	P40006	225 aa		0.85	□□□□□ -2.27
SWI4	YER111C	YKE4	P40544	346 aa		0.85	□□□□□ -2.27
SWI4	YER111C	MRPL49	P40858	161 aa	Predicted RBP	0.85	□□□□□ -2.27
SWI4	YER111C	YJR111C	P47148	283 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	AIF1	P52923	378 aa		0.85	□□□□□ -2.27
SWI4	YER111C	YGR219W	P53307	113 aa		0.85	□□□□□ -2.27
SWI4	YER111C	HNT1	Q04344	158 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	NSP1	P14907	823 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	YCR090C	P25654	182 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	TCA17	P32613	152 aa		0.85	□□□□□ -2.27
SWI4	YER111C	TVP23	P38962	199 aa		0.85	□□□□□ -2.27
SWI4	YER111C	SBH2	P52871	88 aa		0.85	□□□□□ -2.27
SWI4	YER111C	EFM5	P53200	248 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	YDR274C	P87283	123 aa		0.85	□□□□□ -2.27
SWI4	YER111C	YMR099C	Q03161	297 aa	Known RBP	0.85	□□□□□ -2.27
SWI4	YER111C	YDR476C	Q03362	224 aa		0.85	□□□□□ -2.27
SWI4	YER111C	ARO80	Q04052	950 aa		0.85	□□□□□ -2.27
SWI4	YER111C	DPM1	P14020	267 aa	Known RBP	0.84	□□□□□ -2.27
SWI4	YER111C	FCY21	P40039	528 aa		0.84	□□□□□ -2.27
SWI4	YER111C	YER121W	P40076	114 aa		0.84	□□□□□ -2.27
SWI4	YER111C	TRM12	Q04235	462 aa		0.84	□□□□□ -2.27
SWI4	YER111C	SHH4	Q06236	168 aa		0.84	□□□□□ -2.27
SWI4	YER111C	YOR283W	Q12040	230 aa	Known RBP	0.84	□□□□□ -2.27
SWI4	YER111C	PSF1	Q12488	208 aa		0.84	□□□□□ -2.27
SWI4	YER111C	TSC3	Q3E790	80 aa		0.84	□□□□□ -2.27
SWI4	YER111C	YML100W-A	Q8TGT0	57 aa		0.84	□□□□□ -2.27
SWI4	YER111C	UBR2	Q07963	1872 aa		0.84	□□□□□ -2.27
SWI4	YER111C	CMD1	P06787	147 aa	Known RBP	0.84	□□□□□ -2.27
SWI4	YER111C	RPB3	P16370	318 aa	Known RBP	0.84	□□□□□ -2.27
SWI4	YER111C	MGT1	P26188	188 aa		0.84	□□□□□ -2.27
SWI4	YER111C	AME1	P38313	324 aa		0.84	□□□□□ -2.27
SWI4	YER111C	MAK3	Q03503	176 aa		0.84	□□□□□ -2.27
SWI4	YER111C	SPG3	Q04398	127 aa	Predicted RBP	0.84	□□□□□ -2.27
SWI4	YER111C	MCP1	Q12106	302 aa		0.84	□□□□□ -2.27
SWI4	YER111C	RIO1	Q12196	484 aa	Known RBP	0.84	□□□□□ -2.27
SWI4	YER111C	QCR6	P00127	147 aa		0.84	□□□□□ -2.28
SWI4	YER111C	RPL35A	P0CX84	120 aa	Known RBP	0.84	□□□□□ -2.28
SWI4	YER111C	RPL35B	P0CX85	120 aa	Known RBP	0.84	□□□□□ -2.28
SWI4	YER111C	AHC2	P25649	128 aa		0.84	□□□□□ -2.28
SWI4	YER111C	SCM4	P32564	187 aa		0.84	□□□□□ -2.28
SWI4	YER111C	PGD1	P40356	397 aa		0.84	□□□□□ -2.28
SWI4	YER111C	SBH1	P52870	82 aa		0.84	□□□□□ -2.28
SWI4	YER111C	YNL140C	P53910	189 aa		0.84	□□□□□ -2.28
SWI4	YER111C	DID2	P69771	204 aa		0.84	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 128.3 ms