RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C AVT2P39981 480 aa2.97□□□□□ -1.93
NPL4YBR170C TMA20P89886 181 aaPredicted RBP2.97□□□□□ -1.93
NPL4YBR170C YOR342CQ12182 319 aa2.97□□□□□ -1.93
NPL4YBR170C UBC8P28263 218 aa2.96□□□□□ -1.93
NPL4YBR170C UMP1P38293 148 aa2.96□□□□□ -1.93
NPL4YBR170C YER134CP40081 178 aa2.96□□□□□ -1.93
NPL4YBR170C NAT3Q06504 195 aa2.96□□□□□ -1.93
NPL4YBR170C DGK1Q12382 290 aa2.96□□□□□ -1.93
NPL4YBR170C ODC2Q99297 307 aa2.96□□□□□ -1.93
NPL4YBR170C PET54P10834 293 aa2.96□□□□□ -1.94
NPL4YBR170C PAN3P36102 679 aaPredicted RBP2.96□□□□□ -1.94
NPL4YBR170C NSG1P38837 291 aa2.96□□□□□ -1.94
NPL4YBR170C YFL019CP43576 117 aa2.96□□□□□ -1.94
NPL4YBR170C MOG1P47123 218 aa2.96□□□□□ -1.94
NPL4YBR170C YDL180WQ12301 547 aa2.96□□□□□ -1.94
NPL4YBR170C YAR023CD6VPM8 179 aa2.95□□□□□ -1.94
NPL4YBR170C BUB2P26448 306 aaPredicted RBP2.95□□□□□ -1.94
NPL4YBR170C SDH4P37298 181 aa2.95□□□□□ -1.94
NPL4YBR170C VTC1P40046 129 aaRIP-Chip data2.95□□□□□ -1.94not detected
NPL4YBR170C DOC1P53068 250 aa2.95□□□□□ -1.94
NPL4YBR170C YGL101WP53144 215 aa2.95□□□□□ -1.94
NPL4YBR170C SLM2P53955 656 aa2.95□□□□□ -1.94
NPL4YBR170C RDS3Q06835 107 aaPredicted RBP2.95□□□□□ -1.94
NPL4YBR170C CPA1P07258 411 aaKnown RBP2.94□□□□□ -1.94
NPL4YBR170C KDX1P36005 433 aa2.94□□□□□ -1.94
NPL4YBR170C CSH1P38287 376 aa2.94□□□□□ -1.94
NPL4YBR170C YBR285WP38354 144 aa2.94□□□□□ -1.94
NPL4YBR170C SPO73P40031 143 aa2.94□□□□□ -1.94
NPL4YBR170C TTI2P47168 421 aa2.94□□□□□ -1.94
NPL4YBR170C YDR476CQ03362 224 aa2.94□□□□□ -1.94
NPL4YBR170C YPR202WQ08993 238 aa2.94□□□□□ -1.94
NPL4YBR170C DAS2Q12084 232 aa2.94□□□□□ -1.94
NPL4YBR170C YLR046CQ12253 270 aa2.94□□□□□ -1.94
NPL4YBR170C ATO3Q12359 275 aa2.94□□□□□ -1.94
NPL4YBR170C YLR412C-AQ3E742 68 aa2.94□□□□□ -1.94
NPL4YBR170C UBI4P0CG63 381 aaKnown RBP2.93□□□□□ -1.94
NPL4YBR170C SNC2P33328 115 aa2.93□□□□□ -1.94
NPL4YBR170C FCY21P40039 528 aa2.93□□□□□ -1.94
NPL4YBR170C SOK1P40317 901 aa2.93□□□□□ -1.94
NPL4YBR170C EAF6P47128 113 aa2.93□□□□□ -1.94
NPL4YBR170C YGR219WP53307 113 aa2.93□□□□□ -1.94
NPL4YBR170C THI74Q04083 370 aa2.93□□□□□ -1.94
NPL4YBR170C YMR099CQ03161 297 aaKnown RBP2.93□□□□□ -1.94
NPL4YBR170C VPS68Q12016 184 aa2.93□□□□□ -1.94
NPL4YBR170C FAB1P34756 2278 aa2.92□□□□□ -1.94
NPL4YBR170C POR1P04840 283 aaKnown RBP2.92□□□□□ -1.94
NPL4YBR170C YJL144WP47009 104 aa2.92□□□□□ -1.94
NPL4YBR170C XPT1P47165 209 aa2.92□□□□□ -1.94
NPL4YBR170C YNR062CP53748 327 aa2.92□□□□□ -1.94
NPL4YBR170C FSF1Q12029 327 aaKnown RBP2.92□□□□□ -1.94
NPL4YBR170C RPL33BP41056 107 aaKnown RBP2.91□□□□□ -1.94
NPL4YBR170C MPC3P53311 146 aa2.91□□□□□ -1.94
NPL4YBR170C VPS71Q03433 280 aa2.91□□□□□ -1.94
NPL4YBR170C PRM7Q12459 698 aa2.91□□□□□ -1.94
NPL4YBR170C YET1P35723 206 aa2.9□□□□□ -1.94
NPL4YBR170C CIS3P47001 227 aa2.9□□□□□ -1.94
NPL4YBR170C YNR077CP53758 84 aa2.9□□□□□ -1.94
NPL4YBR170C LSM3P57743 89 aaKnown RBP2.9□□□□□ -1.94
NPL4YBR170C RPL2AP0CX45 254 aaKnown RBP2.9□□□□□ -1.95
NPL4YBR170C RPL2BP0CX46 254 aaKnown RBP2.9□□□□□ -1.95
NPL4YBR170C PEX34P25584 144 aa2.9□□□□□ -1.95
NPL4YBR170C YAP3P38749 330 aa2.9□□□□□ -1.95
NPL4YBR170C YNL200CP40165 246 aaKnown RBP2.9□□□□□ -1.95
NPL4YBR170C ORM1P53224 222 aa2.9□□□□□ -1.95
NPL4YBR170C MRPS8Q03799 155 aa2.9□□□□□ -1.95
NPL4YBR170C PBI2P0CT04 75 aaKnown RBP2.89□□□□□ -1.95
NPL4YBR170C CPR5P35176 225 aa2.89□□□□□ -1.95
NPL4YBR170C APQ12P40532 138 aa2.89□□□□□ -1.95
NPL4YBR170C ERJ5P43613 295 aaPredicted RBP2.89□□□□□ -1.95
NPL4YBR170C BOL2P53082 120 aa2.89□□□□□ -1.95
NPL4YBR170C PKR1Q03880 122 aaKnown RBP2.89□□□□□ -1.95
NPL4YBR170C SPC2Q04969 178 aa2.89□□□□□ -1.95
NPL4YBR170C CLB6P32943 380 aa2.88□□□□□ -1.95
NPL4YBR170C UPS2P35200 230 aa2.88□□□□□ -1.95
NPL4YBR170C ERV15P38312 142 aa2.88□□□□□ -1.95
NPL4YBR170C IPI1P38803 334 aaPredicted RBP2.88□□□□□ -1.95
NPL4YBR170C TIR3P40552 269 aa2.88□□□□□ -1.95
NPL4YBR170C YJL027CP47063 138 aaPredicted RBP2.88□□□□□ -1.95
NPL4YBR170C FYV12Q08559 129 aa2.88□□□□□ -1.95
NPL4YBR170C YPR096CO13587 100 aa2.88□□□□□ -1.95
NPL4YBR170C TIR1P10863 254 aa2.88□□□□□ -1.95
NPL4YBR170C SHE2P36068 246 aaKnown RBP RIP-Chip data2.88□□□□□ -1.95not detected
NPL4YBR170C FYV4P38783 130 aaPredicted RBP2.88□□□□□ -1.95
NPL4YBR170C YOR1P53049 1477 aa2.88□□□□□ -1.95
NPL4YBR170C NSP1P14907 823 aaKnown RBP2.87□□□□□ -1.95
NPL4YBR170C IDP1P21954 428 aaKnown RBP2.87□□□□□ -1.95
NPL4YBR170C PEX4P29340 183 aa2.87□□□□□ -1.95
NPL4YBR170C POP7P38291 140 aa2.87□□□□□ -1.95
NPL4YBR170C YOR214CQ12282 236 aa2.87□□□□□ -1.95
NPL4YBR170C EMC6Q12431 108 aa2.87□□□□□ -1.95
NPL4YBR170C RPL30P14120 105 aaKnown RBP2.86□□□□□ -1.95
NPL4YBR170C NUF2P33895 451 aa2.86□□□□□ -1.95
NPL4YBR170C YOR062CP36025 268 aa2.86□□□□□ -1.95
NPL4YBR170C DLS1P40366 167 aa2.86□□□□□ -1.95
NPL4YBR170C YMR295CQ03559 197 aa2.86□□□□□ -1.95
NPL4YBR170C SFK1P35735 353 aa2.85□□□□□ -1.95
NPL4YBR170C PHO88P38264 188 aaPredicted RBP2.85□□□□□ -1.95
NPL4YBR170C SPC25P40014 221 aa2.85□□□□□ -1.95
NPL4YBR170C HHT1P61830 136 aa2.85□□□□□ -1.95
NPL4YBR170C DIG2Q03373 323 aaKnown RBP2.85□□□□□ -1.95
Retrieved 100 of 5,963 RNA–protein pairs in 67.6 ms