RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W PRP43P53131 767 aaKnown RBP8.14□□□□□ -1.11
CAF40YNL288W KEX2P13134 814 aa8.13□□□□□ -1.11
CAF40YNL288W PRP5P21372 849 aaPredicted RBP8.13□□□□□ -1.11
CAF40YNL288W ENV9Q08651 330 aa8.12□□□□□ -1.11
CAF40YNL288W CSE4P36012 229 aa8.11□□□□□ -1.11
CAF40YNL288W NIS1P53939 407 aa8.11□□□□□ -1.11
CAF40YNL288W IMH1Q06704 911 aaKnown RBP8.11□□□□□ -1.11
CAF40YNL288W TY1A-DR4O74302 440 aa8.1□□□□□ -1.11
CAF40YNL288W DPS1P04802 557 aaKnown RBP8.1□□□□□ -1.11
CAF40YNL288W TY1A-HP0C2I4 478 aaKnown RBP8.1□□□□□ -1.11
CAF40YNL288W TY1A-AP0CX57 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-PR1P0CX58 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-ORP0CX59 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-PR2P0CX60 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-DR5P0CX65 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-ER2P0CX66 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-GR3P0CX67 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-LR1P0CX68 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-MR2P0CX69 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-JR2P47099 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-DR1Q03856 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-ML1Q04706 440 aaKnown RBP8.1□□□□□ -1.11
CAF40YNL288W AIM7Q12156 149 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-BRQ12217 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-NL2Q12470 440 aa8.1□□□□□ -1.11
CAF40YNL288W TY1A-GR2Q12485 440 aa8.1□□□□□ -1.11
CAF40YNL288W MLP1Q02455 1875 aaKnown RBP8.1□□□□□ -1.11
CAF40YNL288W RPS24AP0CX31 135 aaKnown RBP8.09□□□□□ -1.11
CAF40YNL288W RPS24BP0CX32 135 aaKnown RBP8.09□□□□□ -1.11
CAF40YNL288W SEC2P17065 759 aa8.09□□□□□ -1.11
CAF40YNL288W PDI1P17967 522 aaKnown RBP8.09□□□□□ -1.11
CAF40YNL288W MRF1P30775 413 aaPredicted RBP8.09□□□□□ -1.11
CAF40YNL288W ERF2Q06551 359 aa8.09□□□□□ -1.11
CAF40YNL288W SIT4P20604 311 aa8.08□□□□□ -1.12
CAF40YNL288W SPT16P32558 1035 aaKnown RBP8.08□□□□□ -1.12
CAF40YNL288W MSB3P48566 633 aaPredicted RBP8.08□□□□□ -1.12
CAF40YNL288W RTF1P53064 558 aa8.08□□□□□ -1.12
CAF40YNL288W PDS5Q04264 1277 aa8.08□□□□□ -1.12
CAF40YNL288W PAT1P25644 796 aaKnown RBP8.07□□□□□ -1.12
CAF40YNL288W RPN1P38764 993 aaKnown RBP8.07□□□□□ -1.12
CAF40YNL288W YNL115CP53925 644 aa8.07□□□□□ -1.12
CAF40YNL288W RSF2P46974 1380 aa8.07□□□□□ -1.12
CAF40YNL288W FPK1P53739 893 aa8.06□□□□□ -1.12
CAF40YNL288W SLM3Q12093 417 aa8.06□□□□□ -1.12
CAF40YNL288W TCB1Q12466 1186 aa8.06□□□□□ -1.12
CAF40YNL288W GLN1P32288 370 aaKnown RBP8.05□□□□□ -1.12
CAF40YNL288W RRN7P40992 514 aa8.05□□□□□ -1.12
CAF40YNL288W TAP42Q04372 366 aa8.05□□□□□ -1.12
CAF40YNL288W ERG12P07277 443 aa8.04□□□□□ -1.12
CAF40YNL288W GRX4P32642 244 aa8.04□□□□□ -1.12
CAF40YNL288W SDH2P21801 266 aa8.03□□□□□ -1.12
CAF40YNL288W YMR074CQ04773 145 aa8.03□□□□□ -1.12
CAF40YNL288W YEL077CQ3E7X8 1277 aa8.03□□□□□ -1.12
CAF40YNL288W ROM2P51862 1356 aaKnown RBP8.02□□□□□ -1.13
CAF40YNL288W URB1P34241 1764 aaKnown RBP8.02□□□□□ -1.13
CAF40YNL288W YIL177CP40434 1758 aa8.02□□□□□ -1.13
CAF40YNL288W YJL225CP40889 1758 aa8.02□□□□□ -1.13
CAF40YNL288W FKS3Q04952 1785 aa8.02□□□□□ -1.13
CAF40YNL288W SEC3P33332 1336 aaKnown RBP8.02□□□□□ -1.13
CAF40YNL288W APC1P53886 1748 aa8.01□□□□□ -1.13
CAF40YNL288W EDE1P34216 1381 aa8.01□□□□□ -1.13
CAF40YNL288W AUS1Q08409 1394 aa8.01□□□□□ -1.13
CAF40YNL288W SLY41P22215 453 aa8.01□□□□□ -1.13
CAF40YNL288W AMS1P22855 1083 aa8.01□□□□□ -1.13
CAF40YNL288W KIN1P13185 1064 aa8□□□□□ -1.13
CAF40YNL288W HST2P53686 357 aa8□□□□□ -1.13
CAF40YNL288W ENP1P38333 483 aaKnown RBP7.99□□□□□ -1.13
CAF40YNL288W XKS1P42826 600 aa7.99□□□□□ -1.13
CAF40YNL288W GAS4Q08271 471 aa7.99□□□□□ -1.13
CAF40YNL288W MMP1Q12372 583 aa7.99□□□□□ -1.13
CAF40YNL288W SIR4P11978 1358 aa7.98□□□□□ -1.13
CAF40YNL288W RAS1P01119 309 aa7.98□□□□□ -1.13
CAF40YNL288W KAR2P16474 682 aaKnown RBP7.98□□□□□ -1.13
CAF40YNL288W SCJ1P25303 377 aa7.98□□□□□ -1.13
CAF40YNL288W TUB4P53378 473 aa7.98□□□□□ -1.13
CAF40YNL288W RPO41P13433 1351 aaKnown RBP7.97□□□□□ -1.13
CAF40YNL288W YEF3P16521 1044 aaKnown RBP7.96□□□□□ -1.14
CAF40YNL288W AGE1Q04412 482 aa7.96□□□□□ -1.14
CAF40YNL288W PAC1P39946 494 aaKnown RBP7.95□□□□□ -1.14
CAF40YNL288W CSN12P47130 423 aa7.95□□□□□ -1.14
CAF40YNL288W HIM1Q06674 414 aa7.95□□□□□ -1.14
CAF40YNL288W TYW1Q08960 810 aaKnown RBP7.95□□□□□ -1.14
CAF40YNL288W YKL133CP36066 463 aa7.94□□□□□ -1.14
CAF40YNL288W DOT5P40553 215 aa7.94□□□□□ -1.14
CAF40YNL288W YRF1-3P0CX14 1859 aa7.94□□□□□ -1.14
CAF40YNL288W YRF1-7P0CX15 1859 aa7.94□□□□□ -1.14
CAF40YNL288W YRF1-6P53819 1859 aa7.94□□□□□ -1.14
CAF40YNL288W UBP1P25037 809 aa7.93□□□□□ -1.14
CAF40YNL288W PUS6P53294 404 aa7.93□□□□□ -1.14
CAF40YNL288W MEC3Q02574 474 aa7.93□□□□□ -1.14
CAF40YNL288W SNF2P22082 1703 aa7.92□□□□□ -1.14
CAF40YNL288W ESS1P22696 170 aa7.92□□□□□ -1.14
CAF40YNL288W FOX2Q02207 900 aaKnown RBP7.92□□□□□ -1.14
CAF40YNL288W TBF1Q02457 562 aa7.92□□□□□ -1.14
CAF40YNL288W CST6P40535 587 aa7.91□□□□□ -1.14
CAF40YNL288W YRF1-4O13559 1382 aa7.9□□□□□ -1.14
CAF40YNL288W TRK1P12685 1235 aa7.9□□□□□ -1.14
CAF40YNL288W KTR1P27810 393 aaKnown RBP7.9□□□□□ -1.14
CAF40YNL288W KXD1P53158 218 aa7.9□□□□□ -1.14
CAF40YNL288W FRK1Q03002 865 aaPredicted RBP7.9□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms