RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIM1	YIL123W	GRE2	Q12068	342 aa	Known RBP	13.47	□□□□□ -0.25
SIM1	YIL123W	MTC5	Q03897	1148 aa		13.47	□□□□□ -0.25
SIM1	YIL123W	DLD1	P32891	587 aa		13.46	□□□□□ -0.26
SIM1	YIL123W	BRN1	P38170	754 aa		13.46	□□□□□ -0.26
SIM1	YIL123W	NPR2	P39923	615 aa		13.46	□□□□□ -0.26
SIM1	YIL123W	YGL082W	P53155	381 aa		13.46	□□□□□ -0.26
SIM1	YIL123W	NYV1	Q12255	253 aa		13.46	□□□□□ -0.26
SIM1	YIL123W	SER1	P33330	395 aa	Known RBP	13.45	□□□□□ -0.26
SIM1	YIL123W	PSH1	Q12161	406 aa		13.45	□□□□□ -0.26
SIM1	YIL123W	PCT1	P13259	424 aa		13.44	□□□□□ -0.26
SIM1	YIL123W	FCP1	Q03254	732 aa		13.44	□□□□□ -0.26
SIM1	YIL123W	SUP35	P05453	685 aa	Known RBP	13.43	□□□□□ -0.26
SIM1	YIL123W	NOT3	P06102	836 aa	Known RBP	13.43	□□□□□ -0.26
SIM1	YIL123W	ECM21	P38167	1117 aa	Known RBP	13.43	□□□□□ -0.26
SIM1	YIL123W	HXT10	P43581	546 aa		13.42	□□□□□ -0.26
SIM1	YIL123W	VAS1	P07806	1104 aa	Known RBP	13.41	□□□□□ -0.26
SIM1	YIL123W	PDR18	P53756	1333 aa		13.41	□□□□□ -0.26
SIM1	YIL123W	YGL242C	P53066	181 aa		13.4	□□□□□ -0.26
SIM1	YIL123W	MLC1	P53141	149 aa		13.39	□□□□□ -0.27
SIM1	YIL123W	SSK22	P25390	1331 aa	Predicted RBP	13.39	□□□□□ -0.27
SIM1	YIL123W	SAC3	P46674	1301 aa		13.39	□□□□□ -0.27
SIM1	YIL123W	UBP1	P25037	809 aa		13.38	□□□□□ -0.27
SIM1	YIL123W	GLN1	P32288	370 aa	Known RBP	13.38	□□□□□ -0.27
SIM1	YIL123W	HXT13	P39924	564 aa		13.38	□□□□□ -0.27
SIM1	YIL123W	BRE1	Q07457	700 aa	Known RBP	13.38	□□□□□ -0.27
SIM1	YIL123W	RLF2	Q12495	606 aa		13.38	□□□□□ -0.27
SIM1	YIL123W	KTR3	P38130	404 aa	Predicted RBP	13.37	□□□□□ -0.27
SIM1	YIL123W	EAF7	P53911	425 aa	Known RBP	13.37	□□□□□ -0.27
SIM1	YIL123W	ALO1	P54783	526 aa	Known RBP	13.37	□□□□□ -0.27
SIM1	YIL123W	HAT1	Q12341	374 aa		13.37	□□□□□ -0.27
SIM1	YIL123W	GYP5	Q12344	894 aa		13.37	□□□□□ -0.27
SIM1	YIL123W	UTP10	P42945	1769 aa	Known RBP	13.36	□□□□□ -0.27
SIM1	YIL123W	HXT17	P53631	564 aa		13.36	□□□□□ -0.27
SIM1	YIL123W	MRPS35	P53292	345 aa		13.35	□□□□□ -0.27
SIM1	YIL123W	BUG1	Q12191	341 aa		13.35	□□□□□ -0.27
SIM1	YIL123W	SNU66	Q12420	587 aa	Predicted RBP	13.35	□□□□□ -0.27
SIM1	YIL123W	RMD1	Q03441	430 aa		13.34	□□□□□ -0.27
SIM1	YIL123W	BUD31	P25337	157 aa	Predicted RBP	13.33	□□□□□ -0.28
SIM1	YIL123W	VPS24	P36095	224 aa	Known RBP	13.33	□□□□□ -0.28
SIM1	YIL123W	UTP22	P53254	1237 aa	Predicted RBP	13.33	□□□□□ -0.28
SIM1	YIL123W	RIM20	Q12033	661 aa		13.33	□□□□□ -0.28
SIM1	YIL123W	LSP1	Q12230	341 aa	Known RBP	13.33	□□□□□ -0.28
SIM1	YIL123W	SLA1	P32790	1244 aa		13.32	□□□□□ -0.28
SIM1	YIL123W	UBP16	Q02863	499 aa		13.32	□□□□□ -0.28
SIM1	YIL123W	FPR4	Q06205	392 aa	Predicted RBP	13.32	□□□□□ -0.28
SIM1	YIL123W	SRS2	P12954	1174 aa		13.31	□□□□□ -0.28
SIM1	YIL123W	SEC18	P18759	758 aa	Known RBP	13.31	□□□□□ -0.28
SIM1	YIL123W	AAP1	P37898	856 aa	Known RBP	13.31	□□□□□ -0.28
SIM1	YIL123W	LYS4	P49367	693 aa	Predicted RBP	13.31	□□□□□ -0.28
SIM1	YIL123W	RAT1	Q02792	1006 aa	Known RBP	13.31	□□□□□ -0.28
SIM1	YIL123W	BDF1	P35817	686 aa		13.3	□□□□□ -0.28
SIM1	YIL123W	KTR1	P27810	393 aa	Known RBP	13.3	□□□□□ -0.28
SIM1	YIL123W	ADR1	P07248	1323 aa		13.29	□□□□□ -0.28
SIM1	YIL123W	AI2	P03876	854 aa		13.29	□□□□□ -0.28
SIM1	YIL123W	TRL1	P09880	827 aa	Known RBP	13.29	□□□□□ -0.28
SIM1	YIL123W	SNF7	P39929	240 aa	Known RBP	13.28	□□□□□ -0.28
SIM1	YIL123W	DIB1	Q06819	143 aa	Predicted RBP	13.28	□□□□□ -0.28
SIM1	YIL123W	RNR2	P09938	399 aa	Known RBP	13.27	□□□□□ -0.29
SIM1	YIL123W	EPS1	P40557	701 aa		13.27	□□□□□ -0.29
SIM1	YIL123W	PIB2	P53191	635 aa		13.26	□□□□□ -0.29
SIM1	YIL123W	RPN7	Q06103	429 aa	Known RBP	13.26	□□□□□ -0.29
SIM1	YIL123W	RPG1	P38249	964 aa	Known RBP	13.25	□□□□□ -0.29
SIM1	YIL123W	OSH3	P38713	996 aa	Known RBP	13.25	□□□□□ -0.29
SIM1	YIL123W	CTH1	P47976	325 aa		13.25	□□□□□ -0.29
SIM1	YIL123W	YNL193W	P53870	558 aa		13.25	□□□□□ -0.29
SIM1	YIL123W	CLC1	P17891	233 aa		13.24	□□□□□ -0.29
SIM1	YIL123W	ROX1	P25042	368 aa		13.24	□□□□□ -0.29
SIM1	YIL123W	DJP1	P40564	432 aa		13.24	□□□□□ -0.29
SIM1	YIL123W	CTI6	Q08923	506 aa		13.24	□□□□□ -0.29
SIM1	YIL123W	STM1	P39015	273 aa	Known RBP	13.23	□□□□□ -0.29
SIM1	YIL123W	POM152	P39685	1337 aa		13.22	□□□□□ -0.29
SIM1	YIL123W	MSP1	P28737	362 aa		13.22	□□□□□ -0.29
SIM1	YIL123W	TOS1	P38288	455 aa		13.22	□□□□□ -0.29
SIM1	YIL123W	ALD3	P54114	506 aa		13.22	□□□□□ -0.29
SIM1	YIL123W	DUR1,2	P32528	1835 aa	Known RBP	13.21	□□□□□ -0.3
SIM1	YIL123W	PIF1	P07271	859 aa		13.21	□□□□□ -0.3
SIM1	YIL123W	TPM1	P17536	199 aa	Known RBP	13.21	□□□□□ -0.3
SIM1	YIL123W	OPI1	P21957	404 aa		13.21	□□□□□ -0.3
SIM1	YIL123W	PBY1	P38254	753 aa		13.21	□□□□□ -0.3
SIM1	YIL123W	GTT3	P39996	337 aa		13.21	□□□□□ -0.3
SIM1	YIL123W	AIM9	P40053	627 aa	Known RBP	13.21	□□□□□ -0.3
SIM1	YIL123W	ALD2	P47771	506 aa		13.21	□□□□□ -0.3
SIM1	YIL123W	NGR1	P32831	672 aa	Known RBP	13.2	□□□□□ -0.3
SIM1	YIL123W	SPO22	P40511	975 aa		13.2	□□□□□ -0.3
SIM1	YIL123W	SYF1	Q04048	859 aa	Predicted RBP	13.2	□□□□□ -0.3
SIM1	YIL123W	BDF2	Q07442	638 aa		13.2	□□□□□ -0.3
SIM1	YIL123W	HAL5	P38970	855 aa	Known RBP	13.19	□□□□□ -0.3
SIM1	YIL123W	NPA3	P47122	385 aa		13.19	□□□□□ -0.3
SIM1	YIL123W	VPS20	Q04272	221 aa		13.19	□□□□□ -0.3
SIM1	YIL123W	RIX7	Q07844	837 aa	Known RBP	13.19	□□□□□ -0.3
SIM1	YIL123W	GLO3	P38682	493 aa	Known RBP	13.18	□□□□□ -0.3
SIM1	YIL123W	THI3	Q07471	609 aa		13.18	□□□□□ -0.3
SIM1	YIL123W	RRI2	Q12348	645 aa		13.18	□□□□□ -0.3
SIM1	YIL123W	DPH6	Q12429	685 aa		13.18	□□□□□ -0.3
SIM1	YIL123W	NUG1	P40010	520 aa	Known RBP	13.17	□□□□□ -0.3
SIM1	YIL123W	KRI1	P42846	591 aa	Known RBP	13.17	□□□□□ -0.3
SIM1	YIL123W	HPC2	Q01448	625 aa		13.17	□□□□□ -0.3
SIM1	YIL123W	SRC1	Q03707	834 aa		13.17	□□□□□ -0.3
SIM1	YIL123W	MGM1	P32266	881 aa		13.16	□□□□□ -0.3
SIM1	YIL123W	ICP55	P40051	511 aa		13.16	□□□□□ -0.3

Retrieved 100 of 5,963 RNA–protein pairs in 6.9 ms