RNA–Protein interactions for RNA: YDR311W

TFB1, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB1, Length 1,929 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB1	YDR311W	THI11	P47183	340 aa		4.04	□□□□□ -1.76
TFB1	YDR311W	PUF6	Q04373	656 aa	Known RBP	4.04	□□□□□ -1.76
TFB1	YDR311W	THI13	Q07748	340 aa		4.04	□□□□□ -1.76
TFB1	YDR311W	FRA1	Q07825	749 aa		4.04	□□□□□ -1.76
TFB1	YDR311W	STB3	Q12427	513 aa		4.04	□□□□□ -1.76
TFB1	YDR311W	PPX1	P38698	397 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	OYE2	Q03558	400 aa	Known RBP	4.03	□□□□□ -1.76
TFB1	YDR311W	UGA3	P26370	528 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	GAR1	P28007	205 aa	Known RBP	4.03	□□□□□ -1.76
TFB1	YDR311W	YBL086C	P38177	466 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	SOH1	P38633	127 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	RTT106	P40161	455 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	PTK2	P47116	818 aa	Known RBP	4.03	□□□□□ -1.76
TFB1	YDR311W	STE20	Q03497	939 aa	Known RBP	4.03	□□□□□ -1.76
TFB1	YDR311W	YDR444W	Q04093	687 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	PUN1	Q06991	263 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	FRT1	Q99332	602 aa		4.03	□□□□□ -1.76
TFB1	YDR311W	HAP4	P14064	554 aa		4.02	□□□□□ -1.77
TFB1	YDR311W	TEC1	P18412	486 aa		4.02	□□□□□ -1.77
TFB1	YDR311W	APL6	P46682	809 aa		4.02	□□□□□ -1.77
TFB1	YDR311W	ATG1	P53104	897 aa		4.02	□□□□□ -1.77
TFB1	YDR311W	APP1	P53933	587 aa		4.02	□□□□□ -1.77
TFB1	YDR311W	LCB5	Q06147	687 aa	Known RBP	4.02	□□□□□ -1.77
TFB1	YDR311W	FUR4	P05316	633 aa	Known RBP	4.01	□□□□□ -1.77
TFB1	YDR311W	PDI1	P17967	522 aa	Known RBP	4.01	□□□□□ -1.77
TFB1	YDR311W	QDR1	P40475	563 aa		4.01	□□□□□ -1.77
TFB1	YDR311W	NUT2	Q06213	157 aa		4.01	□□□□□ -1.77
TFB1	YDR311W	MET4	P32389	672 aa		4.01	□□□□□ -1.77
TFB1	YDR311W	GLO3	P38682	493 aa	Known RBP	4.01	□□□□□ -1.77
TFB1	YDR311W	ALD4	P46367	519 aa	Known RBP	4.01	□□□□□ -1.77
TFB1	YDR311W	YPL062W	Q02781	134 aa		4.01	□□□□□ -1.77
TFB1	YDR311W	MAG2	Q06436	670 aa	Known RBP	4.01	□□□□□ -1.77
TFB1	YDR311W	TSC13	Q99190	310 aa		4.01	□□□□□ -1.77
TFB1	YDR311W	SRS2	P12954	1174 aa		4	□□□□□ -1.77
TFB1	YDR311W	GUT2	P32191	649 aa		4	□□□□□ -1.77
TFB1	YDR311W	MET1	P36150	593 aa		4	□□□□□ -1.77
TFB1	YDR311W	JIP5	Q06214	492 aa	Predicted RBP	4	□□□□□ -1.77
TFB1	YDR311W	BRN1	P38170	754 aa		3.99	□□□□□ -1.77
TFB1	YDR311W	HAL5	P38970	855 aa	Known RBP	3.99	□□□□□ -1.77
TFB1	YDR311W	NUP85	P46673	744 aa		3.99	□□□□□ -1.77
TFB1	YDR311W	SVF1	Q05515	481 aa		3.99	□□□□□ -1.77
TFB1	YDR311W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	3.99	□□□□□ -1.77	not detected
TFB1	YDR311W	SPC42	P36094	363 aa		3.99	□□□□□ -1.77
TFB1	YDR311W	ACF4	P47129	309 aa		3.99	□□□□□ -1.77
TFB1	YDR311W	YJR107W	P47145	328 aa		3.99	□□□□□ -1.77
TFB1	YDR311W	GAS4	Q08271	471 aa		3.99	□□□□□ -1.77
TFB1	YDR311W	SUV3	P32580	737 aa		3.98	□□□□□ -1.77
TFB1	YDR311W	ATG3	P40344	310 aa		3.98	□□□□□ -1.77
TFB1	YDR311W	UTP13	Q05946	817 aa	Known RBP	3.98	□□□□□ -1.77
TFB1	YDR311W	OPT2	Q06593	877 aa		3.98	□□□□□ -1.77
TFB1	YDR311W	YDL176W	Q12027	708 aa		3.98	□□□□□ -1.77
TFB1	YDR311W	SRF1	Q12516	437 aa		3.98	□□□□□ -1.77
TFB1	YDR311W	MKS1	P34072	584 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	MGE1	P38523	228 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	AAD14	P42884	376 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	NNF1	P47149	201 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	MNL2	Q12205	849 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	ARG82	P07250	355 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	MIP1	P15801	1254 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	VAN1	P23642	535 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	FYV10	P40492	516 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	GPI13	Q07830	1017 aa		3.97	□□□□□ -1.77
TFB1	YDR311W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.96	□□□□□ -1.78	not detected
TFB1	YDR311W	BOI1	P38041	980 aa	Known RBP	3.96	□□□□□ -1.78
TFB1	YDR311W	ACO2	P39533	789 aa		3.96	□□□□□ -1.78
TFB1	YDR311W	DFG5	Q05031	458 aa		3.96	□□□□□ -1.78
TFB1	YDR311W	STE6	P12866	1290 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	FBP26	P32604	452 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	GLY1	P37303	387 aa	Known RBP	3.95	□□□□□ -1.78
TFB1	YDR311W	AIM9	P40053	627 aa	Known RBP	3.95	□□□□□ -1.78
TFB1	YDR311W	ISR1	Q06098	443 aa	Known RBP	3.95	□□□□□ -1.78
TFB1	YDR311W	YLR346C	Q06139	101 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	MCM2	P29469	868 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	DOS2	P54858	310 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	SPR28	Q04921	423 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	HDA3	Q06623	655 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	LSO1	Q3E827	93 aa		3.95	□□□□□ -1.78
TFB1	YDR311W	NTH2	P35172	780 aa		3.94	□□□□□ -1.78
TFB1	YDR311W	VAC8	P39968	578 aa		3.94	□□□□□ -1.78
TFB1	YDR311W	YJR098C	P47139	656 aa		3.94	□□□□□ -1.78
TFB1	YDR311W	ALD3	P54114	506 aa		3.94	□□□□□ -1.78
TFB1	YDR311W	FPR4	Q06205	392 aa	Predicted RBP	3.94	□□□□□ -1.78
TFB1	YDR311W	ATG20	Q07528	640 aa		3.94	□□□□□ -1.78
TFB1	YDR311W	YOL098C	Q12496	1037 aa		3.94	□□□□□ -1.78
TFB1	YDR311W	TRS33	Q99394	268 aa		3.94	□□□□□ -1.78
TFB1	YDR311W	LSC2	P53312	427 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	FAR11	P53917	953 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	ISU1	Q03020	165 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	BDS1	Q08347	646 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	TY1A-BL	Q12266	440 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	DLD1	P32891	587 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	RPT1	P33299	467 aa	Known RBP	3.93	□□□□□ -1.78
TFB1	YDR311W	YAF9	P53930	226 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	ALD6	P54115	500 aa	Known RBP	3.93	□□□□□ -1.78
TFB1	YDR311W	TRS120	Q04183	1289 aa		3.93	□□□□□ -1.78
TFB1	YDR311W	PHO4	P07270	312 aa	Known RBP	3.92	□□□□□ -1.78
TFB1	YDR311W	DAK2	P43550	591 aa		3.92	□□□□□ -1.78
TFB1	YDR311W	RNH70	P53331	553 aa		3.92	□□□□□ -1.78
TFB1	YDR311W	UBP1	P25037	809 aa		3.91	□□□□□ -1.78
TFB1	YDR311W	NGR1	P32831	672 aa	Known RBP	3.91	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 46.7 ms