RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C RRN6P32786 894 aa6.46□□□□□ -1.38
NPL4YBR170C PEP12P32854 288 aa6.46□□□□□ -1.38
NPL4YBR170C BDS1Q08347 646 aa6.46□□□□□ -1.38
NPL4YBR170C PAM1P37304 830 aaKnown RBP6.45□□□□□ -1.38
NPL4YBR170C YPP1P46951 817 aa6.44□□□□□ -1.38
NPL4YBR170C CDC19P00549 500 aaKnown RBP6.43□□□□□ -1.38
NPL4YBR170C AI1P03875 834 aa6.43□□□□□ -1.38
NPL4YBR170C RDS2P19541 446 aaKnown RBP6.43□□□□□ -1.38
NPL4YBR170C NAF1P53919 492 aaKnown RBP6.43□□□□□ -1.38
NPL4YBR170C FIG4P42837 879 aa6.42□□□□□ -1.38
NPL4YBR170C MET10P39692 1035 aa6.42□□□□□ -1.38
NPL4YBR170C NAM8Q00539 523 aaKnown RBP6.42□□□□□ -1.38
NPL4YBR170C ECM23Q02710 187 aa6.42□□□□□ -1.38
NPL4YBR170C THI72Q08579 599 aa6.42□□□□□ -1.38
NPL4YBR170C FBP26P32604 452 aa6.41□□□□□ -1.38
NPL4YBR170C MCM16Q12262 181 aa6.41□□□□□ -1.38
NPL4YBR170C STM1P39015 273 aaKnown RBP6.4□□□□□ -1.38
NPL4YBR170C VTC4P47075 721 aa6.4□□□□□ -1.38
NPL4YBR170C IPL1P38991 367 aa6.39□□□□□ -1.39
NPL4YBR170C KTR7P40504 517 aa6.39□□□□□ -1.39
NPL4YBR170C NRD1P53617 575 aaKnown RBP RIP-Chip data6.39□□□□□ -1.39not detected
NPL4YBR170C NAP1P25293 417 aaKnown RBP6.39□□□□□ -1.39
NPL4YBR170C YBL113CQ7M4S9 792 aa6.39□□□□□ -1.39
NPL4YBR170C TEC1P18412 486 aa6.38□□□□□ -1.39
NPL4YBR170C CEM1P39525 442 aa6.38□□□□□ -1.39
NPL4YBR170C STE6P12866 1290 aa6.37□□□□□ -1.39
NPL4YBR170C GAL2P13181 574 aa6.37□□□□□ -1.39
NPL4YBR170C CUZ1P53899 274 aa6.37□□□□□ -1.39
NPL4YBR170C SEC20P28791 383 aa6.36□□□□□ -1.39
NPL4YBR170C UBX7P38349 436 aa6.36□□□□□ -1.39
NPL4YBR170C ERP5P38819 212 aa6.36□□□□□ -1.39
NPL4YBR170C CCT8P47079 568 aaKnown RBP6.36□□□□□ -1.39
NPL4YBR170C ASF1P32447 279 aa6.36□□□□□ -1.39
NPL4YBR170C ISF1P32488 338 aa6.36□□□□□ -1.39
NPL4YBR170C RPP2BP02400 110 aaKnown RBP6.35□□□□□ -1.39
NPL4YBR170C YFL066CP43538 392 aa6.35□□□□□ -1.39
NPL4YBR170C TPS3P38426 1054 aaKnown RBP6.34□□□□□ -1.39
NPL4YBR170C EMP47P43555 445 aa6.34□□□□□ -1.39
NPL4YBR170C MSC6Q08818 692 aaKnown RBP6.34□□□□□ -1.39
NPL4YBR170C YPR053CQ6Q5F3 151 aa6.34□□□□□ -1.39
NPL4YBR170C DAL1P32375 460 aa6.33□□□□□ -1.4
NPL4YBR170C DLD3P39976 496 aaKnown RBP6.33□□□□□ -1.4
NPL4YBR170C CWC15Q03772 175 aaKnown RBP6.33□□□□□ -1.4
NPL4YBR170C KAR5Q04746 504 aa6.33□□□□□ -1.4
NPL4YBR170C TRL1P09880 827 aaKnown RBP6.32□□□□□ -1.4
NPL4YBR170C ALD2P47771 506 aa6.32□□□□□ -1.4
NPL4YBR170C IOC4Q04213 475 aa6.32□□□□□ -1.4
NPL4YBR170C ADE12P80210 433 aaKnown RBP6.31□□□□□ -1.4
NPL4YBR170C ISU1Q03020 165 aa6.31□□□□□ -1.4
NPL4YBR170C RRP15Q06511 250 aaPredicted RBP6.31□□□□□ -1.4
NPL4YBR170C SBP1P10080 294 aaKnown RBP6.3□□□□□ -1.4
NPL4YBR170C YHL050CP38721 697 aa6.3□□□□□ -1.4
NPL4YBR170C YHR219WP38900 624 aa6.3□□□□□ -1.4
NPL4YBR170C MDJ2P42834 146 aa6.3□□□□□ -1.4
NPL4YBR170C YMR265CQ03508 461 aaKnown RBP6.3□□□□□ -1.4
NPL4YBR170C PUF6Q04373 656 aaKnown RBP6.3□□□□□ -1.4
NPL4YBR170C YPR084WQ06821 456 aa6.3□□□□□ -1.4
NPL4YBR170C ATG20Q07528 640 aa6.3□□□□□ -1.4
NPL4YBR170C PHO87P25360 923 aa6.29□□□□□ -1.4
NPL4YBR170C GUT2P32191 649 aa6.29□□□□□ -1.4
NPL4YBR170C FRA1Q07825 749 aa6.29□□□□□ -1.4
NPL4YBR170C GRS1P38088 690 aaKnown RBP6.28□□□□□ -1.4
NPL4YBR170C UBP15P50101 1230 aa6.28□□□□□ -1.4
NPL4YBR170C ATE1P16639 503 aa6.28□□□□□ -1.4
NPL4YBR170C DIT1P21623 536 aa6.28□□□□□ -1.4
NPL4YBR170C POL32P47110 350 aa6.28□□□□□ -1.4
NPL4YBR170C PPX1P38698 397 aa6.27□□□□□ -1.41
NPL4YBR170C ATG3P40344 310 aa6.27□□□□□ -1.41
NPL4YBR170C ACS2P52910 683 aaKnown RBP6.27□□□□□ -1.41
NPL4YBR170C STE20Q03497 939 aaKnown RBP6.27□□□□□ -1.41
NPL4YBR170C SYT1Q06836 1226 aa6.27□□□□□ -1.41
NPL4YBR170C WHI5Q12416 295 aa6.27□□□□□ -1.41
NPL4YBR170C HAP4P14064 554 aa6.26□□□□□ -1.41
NPL4YBR170C APL6P46682 809 aa6.26□□□□□ -1.41
NPL4YBR170C ROM1P53046 1155 aa6.26□□□□□ -1.41
NPL4YBR170C PNP1Q05788 311 aa6.26□□□□□ -1.41
NPL4YBR170C YTA7P40340 1379 aa6.26□□□□□ -1.41
NPL4YBR170C BOL3P39724 118 aa6.25□□□□□ -1.41
NPL4YBR170C ATG1P53104 897 aa6.25□□□□□ -1.41
NPL4YBR170C KRE33P53914 1056 aaKnown RBP6.25□□□□□ -1.41
NPL4YBR170C YMR187CQ03236 431 aa6.25□□□□□ -1.41
NPL4YBR170C UTP13Q05946 817 aaKnown RBP6.25□□□□□ -1.41
NPL4YBR170C SOH1P38633 127 aa6.24□□□□□ -1.41
NPL4YBR170C OCA5P38738 679 aa6.24□□□□□ -1.41
NPL4YBR170C SKN7P38889 622 aa6.24□□□□□ -1.41
NPL4YBR170C TDA6Q06466 467 aa6.24□□□□□ -1.41
NPL4YBR170C YDR461C-AQ2V2P7 80 aa6.24□□□□□ -1.41
NPL4YBR170C MSN5P52918 1224 aa6.23□□□□□ -1.41
NPL4YBR170C SRS2P12954 1174 aa6.22□□□□□ -1.41
NPL4YBR170C SBE2P42223 864 aaKnown RBP6.22□□□□□ -1.41
NPL4YBR170C SVF1Q05515 481 aa6.22□□□□□ -1.41
NPL4YBR170C GAS4Q08271 471 aa6.22□□□□□ -1.41
NPL4YBR170C PUN1Q06991 263 aa6.22□□□□□ -1.41
NPL4YBR170C TSC13Q99190 310 aa6.22□□□□□ -1.41
NPL4YBR170C FUR4P05316 633 aaKnown RBP6.21□□□□□ -1.42
NPL4YBR170C THI12P42883 340 aa6.21□□□□□ -1.42
NPL4YBR170C THI5P43534 340 aa6.21□□□□□ -1.42
NPL4YBR170C THI11P47183 340 aa6.21□□□□□ -1.42
NPL4YBR170C THI13Q07748 340 aa6.21□□□□□ -1.42
NPL4YBR170C AHP1P38013 176 aaKnown RBP6.2□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms