RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	BDS1	Q08347	646 aa		3.54	□□□□□ -1.84
CLN3	YAL040C	TCB1	Q12466	1186 aa		3.54	□□□□□ -1.84
CLN3	YAL040C	YOR1	P53049	1477 aa		3.54	□□□□□ -1.84
CLN3	YAL040C	FBP26	P32604	452 aa		3.53	□□□□□ -1.84
CLN3	YAL040C	RPN1	P38764	993 aa	Known RBP	3.53	□□□□□ -1.84
CLN3	YAL040C	NAF1	P53919	492 aa	Known RBP	3.53	□□□□□ -1.84
CLN3	YAL040C	YPR084W	Q06821	456 aa		3.53	□□□□□ -1.84
CLN3	YAL040C	RPP2B	P02400	110 aa	Known RBP	3.53	□□□□□ -1.85
CLN3	YAL040C	TRK2	P28584	889 aa		3.53	□□□□□ -1.85
CLN3	YAL040C	TOP2	P06786	1428 aa	Known RBP	3.52	□□□□□ -1.85
CLN3	YAL040C	MMS22	Q06164	1454 aa		3.52	□□□□□ -1.85
CLN3	YAL040C	HPF1	Q05164	967 aa		3.52	□□□□□ -1.85
CLN3	YAL040C	ESC1	Q03661	1658 aa	Known RBP	3.52	□□□□□ -1.85
CLN3	YAL040C	STE6	P12866	1290 aa		3.51	□□□□□ -1.85
CLN3	YAL040C	OSH7	P38755	437 aa		3.51	□□□□□ -1.85
CLN3	YAL040C	ROG3	P43602	733 aa		3.51	□□□□□ -1.85
CLN3	YAL040C	STE20	Q03497	939 aa	Known RBP	3.51	□□□□□ -1.85
CLN3	YAL040C	CDC25	P04821	1589 aa		3.51	□□□□□ -1.85
CLN3	YAL040C	SPT5	P27692	1063 aa	Known RBP	3.5	□□□□□ -1.85
CLN3	YAL040C	CSE4	P36012	229 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	TY1A-MR1	Q04215	440 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	ATG20	Q07528	640 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	YPR204W	Q08995	1032 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	CHD1	P32657	1468 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-JR2	P47100	1755 aa	Known RBP	3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-ER2	Q03619	1755 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-MR1	Q04214	1755 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-MR2	Q04670	1755 aa	Known RBP	3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-LR1	Q12088	1755 aa	Known RBP	3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-NL1	Q12112	1755 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-GR1	Q12141	1755 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	TY1B-BL	Q12490	1755 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	MRX12	P47084	519 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	FRA1	Q07825	749 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	DPH6	Q12429	685 aa		3.5	□□□□□ -1.85
CLN3	YAL040C	MLP2	P40457	1679 aa		3.49	□□□□□ -1.85
CLN3	YAL040C	SMC4	Q12267	1418 aa		3.49	□□□□□ -1.85
CLN3	YAL040C	DLD3	P39976	496 aa	Known RBP	3.49	□□□□□ -1.85
CLN3	YAL040C	HPC2	Q01448	625 aa		3.49	□□□□□ -1.85
CLN3	YAL040C	ISU1	Q03020	165 aa		3.49	□□□□□ -1.85
CLN3	YAL040C	MYO4	P32492	1471 aa		3.48	□□□□□ -1.85
CLN3	YAL040C	GUA1	P38625	525 aa	Known RBP	3.48	□□□□□ -1.85
CLN3	YAL040C	VTC4	P47075	721 aa		3.48	□□□□□ -1.85
CLN3	YAL040C	LYS5	P50113	272 aa		3.48	□□□□□ -1.85
CLN3	YAL040C	RPA190	P10964	1664 aa	Known RBP	3.48	□□□□□ -1.85
CLN3	YAL040C	DNF1	P32660	1571 aa		3.48	□□□□□ -1.85
CLN3	YAL040C	CDC19	P00549	500 aa	Known RBP	3.47	□□□□□ -1.85
CLN3	YAL040C	YBL036C	P38197	257 aa		3.47	□□□□□ -1.85
CLN3	YAL040C	BRL1	P38770	471 aa		3.47	□□□□□ -1.85
CLN3	YAL040C	YTA7	P40340	1379 aa		3.47	□□□□□ -1.85
CLN3	YAL040C	ULS1	Q08562	1619 aa		3.47	□□□□□ -1.85
CLN3	YAL040C	SNQ2	P32568	1501 aa	Known RBP	3.46	□□□□□ -1.86
CLN3	YAL040C	NTE1	Q04958	1679 aa		3.46	□□□□□ -1.86
CLN3	YAL040C	CCP1	P00431	361 aa		3.46	□□□□□ -1.86
CLN3	YAL040C	MCM16	Q12262	181 aa		3.46	□□□□□ -1.86
CLN3	YAL040C	VTH1	P40438	1549 aa		3.45	□□□□□ -1.86
CLN3	YAL040C	VTH2	P40890	1549 aa		3.45	□□□□□ -1.86
CLN3	YAL040C	SPP41	P38904	1435 aa		3.45	□□□□□ -1.86
CLN3	YAL040C	DAL1	P32375	460 aa		3.45	□□□□□ -1.86
CLN3	YAL040C	ATG3	P40344	310 aa		3.45	□□□□□ -1.86
CLN3	YAL040C	EMP47	P43555	445 aa		3.45	□□□□□ -1.86
CLN3	YAL040C	PAN1	P32521	1480 aa		3.45	□□□□□ -1.86
CLN3	YAL040C	PDR15	Q04182	1529 aa	Known RBP	3.45	□□□□□ -1.86
CLN3	YAL040C	SPT2	P06843	333 aa	Predicted RBP	3.44	□□□□□ -1.86
CLN3	YAL040C	UTR2	P32623	467 aa		3.44	□□□□□ -1.86
CLN3	YAL040C	YPP1	P46951	817 aa		3.44	□□□□□ -1.86
CLN3	YAL040C	JJJ3	P47138	172 aa		3.44	□□□□□ -1.86
CLN3	YAL040C	ISR1	Q06098	443 aa	Known RBP	3.44	□□□□□ -1.86
CLN3	YAL040C	WTM2	Q12206	467 aa		3.44	□□□□□ -1.86
CLN3	YAL040C	DAT1	P13483	248 aa	Known RBP	3.44	□□□□□ -1.86
CLN3	YAL040C	TBS1	P38114	1094 aa		3.44	□□□□□ -1.86
CLN3	YAL040C	NAM8	Q00539	523 aa	Known RBP	3.44	□□□□□ -1.86
CLN3	YAL040C	RPO21	P04050	1733 aa	Known RBP	3.44	□□□□□ -1.86
CLN3	YAL040C	ISF1	P32488	338 aa		3.43	□□□□□ -1.86
CLN3	YAL040C	APL6	P46682	809 aa		3.43	□□□□□ -1.86
CLN3	YAL040C	TFB3	Q03290	321 aa		3.43	□□□□□ -1.86
CLN3	YAL040C	PUS1	Q12211	544 aa	Known RBP	3.43	□□□□□ -1.86
CLN3	YAL040C	PHM7	Q12252	991 aa		3.43	□□□□□ -1.86
CLN3	YAL040C	AHP1	P38013	176 aa	Known RBP	3.42	□□□□□ -1.86
CLN3	YAL040C	CEM1	P39525	442 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	ICP55	P40051	511 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	UBP15	P50101	1230 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	MSN5	P52918	1224 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	YRF1-1	P0CX20	1796 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	YRF1-5	P0CX21	1796 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	YRF1-8	P0CX22	1796 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	TSC11	P40061	1430 aa		3.42	□□□□□ -1.86
CLN3	YAL040C	CUZ1	P53899	274 aa		3.41	□□□□□ -1.86
CLN3	YAL040C	UTP13	Q05946	817 aa	Known RBP	3.41	□□□□□ -1.86
CLN3	YAL040C	YBT1	P32386	1661 aa		3.41	□□□□□ -1.86
CLN3	YAL040C	YDJ1	P25491	409 aa	Known RBP	3.41	□□□□□ -1.86
CLN3	YAL040C	YMR265C	Q03508	461 aa	Known RBP	3.41	□□□□□ -1.86
CLN3	YAL040C	STH1	P32597	1359 aa		3.41	□□□□□ -1.86
CLN3	YAL040C	TY3B-G	Q99315	1547 aa		3.4	□□□□□ -1.86
CLN3	YAL040C	SOH1	P38633	127 aa		3.4	□□□□□ -1.87
CLN3	YAL040C	SSN3	P39073	555 aa		3.4	□□□□□ -1.87
CLN3	YAL040C	TRM732	Q03496	1420 aa		3.4	□□□□□ -1.87
CLN3	YAL040C	AI1	P03875	834 aa		3.39	□□□□□ -1.87
CLN3	YAL040C	DIT1	P21623	536 aa		3.39	□□□□□ -1.87
CLN3	YAL040C	BIO2	P32451	375 aa		3.39	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 40.9 ms