RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W PRI1P10363 409 aa17.17■□□□□ 0.34
DEP1YAL013W RPG1P38249 964 aaKnown RBP17.17■□□□□ 0.34
DEP1YAL013W SSK22P25390 1331 aaPredicted RBP17.17■□□□□ 0.34
DEP1YAL013W YBL086CP38177 466 aa17.16■□□□□ 0.34
DEP1YAL013W ITC1P53125 1264 aa17.16■□□□□ 0.34
DEP1YAL013W FCP1Q03254 732 aa17.16■□□□□ 0.34
DEP1YAL013W TOS1P38288 455 aa17.15■□□□□ 0.34
DEP1YAL013W PKH1Q03407 766 aa17.14■□□□□ 0.33
DEP1YAL013W MTC5Q03897 1148 aa17.14■□□□□ 0.33
DEP1YAL013W SSA2P10592 639 aaKnown RBP17.13■□□□□ 0.33
DEP1YAL013W ALD3P54114 506 aa17.12■□□□□ 0.33
DEP1YAL013W RPC31P17890 251 aa17.11■□□□□ 0.33
DEP1YAL013W NMD2P38798 1089 aaKnown RBP17.11■□□□□ 0.33
DEP1YAL013W HXT10P43581 546 aa17.11■□□□□ 0.33
DEP1YAL013W ECM16Q04217 1267 aaKnown RBP17.11■□□□□ 0.33
DEP1YAL013W PSH1Q12161 406 aa17.11■□□□□ 0.33
DEP1YAL013W HAT1Q12341 374 aa17.11■□□□□ 0.33
DEP1YAL013W SAC3P46674 1301 aa17.11■□□□□ 0.33
DEP1YAL013W RAT1Q02792 1006 aaKnown RBP17.1■□□□□ 0.33
DEP1YAL013W SSF1P38789 453 aaPredicted RBP17.08■□□□□ 0.32
DEP1YAL013W CDC16P09798 840 aa17.07■□□□□ 0.32
DEP1YAL013W UGA2P38067 497 aa17.07■□□□□ 0.32
DEP1YAL013W NKP2Q06162 153 aa17.06■□□□□ 0.32
DEP1YAL013W RIX7Q07844 837 aaKnown RBP17.06■□□□□ 0.32
DEP1YAL013W CTI6Q08923 506 aa17.05■□□□□ 0.32
DEP1YAL013W DIB1Q06819 143 aaPredicted RBP17.04■□□□□ 0.32
DEP1YAL013W RFC1P38630 861 aaKnown RBP17.03■□□□□ 0.32
DEP1YAL013W SUP35P05453 685 aaKnown RBP17.02■□□□□ 0.32
DEP1YAL013W RAD50P12753 1312 aa17.01■□□□□ 0.31
DEP1YAL013W HPC2Q01448 625 aa16.99■□□□□ 0.31
DEP1YAL013W NCB2Q92317 146 aa16.99■□□□□ 0.31
DEP1YAL013W PMD1P32634 1753 aa16.98■□□□□ 0.31
DEP1YAL013W UBP16Q02863 499 aa16.98■□□□□ 0.31
DEP1YAL013W GYP5Q12344 894 aa16.97■□□□□ 0.31
DEP1YAL013W ADR1P07248 1323 aa16.96■□□□□ 0.31
DEP1YAL013W KTR3P38130 404 aaPredicted RBP16.96■□□□□ 0.31
DEP1YAL013W BDP1P46678 594 aa16.96■□□□□ 0.31
DEP1YAL013W BDF2Q07442 638 aa16.96■□□□□ 0.31
DEP1YAL013W DUR1,2P32528 1835 aaKnown RBP16.96■□□□□ 0.3
DEP1YAL013W NOT3P06102 836 aaKnown RBP16.95■□□□□ 0.3
DEP1YAL013W ECM21P38167 1117 aaKnown RBP16.95■□□□□ 0.3
DEP1YAL013W YGL242CP53066 181 aa16.95■□□□□ 0.3
DEP1YAL013W SYF1Q04048 859 aaPredicted RBP16.95■□□□□ 0.3
DEP1YAL013W SNU66Q12420 587 aaPredicted RBP16.95■□□□□ 0.3
DEP1YAL013W YIR014WP40570 242 aa16.93■□□□□ 0.3
DEP1YAL013W SLA1P32790 1244 aa16.92■□□□□ 0.3
DEP1YAL013W SEC18P18759 758 aaKnown RBP16.91■□□□□ 0.3
DEP1YAL013W PFF1P38244 976 aa16.91■□□□□ 0.3
DEP1YAL013W MLC1P53141 149 aa16.91■□□□□ 0.3
DEP1YAL013W ALO1P54783 526 aaKnown RBP16.91■□□□□ 0.3
DEP1YAL013W PDR18P53756 1333 aa16.9■□□□□ 0.3
DEP1YAL013W AI2P03876 854 aa16.89■□□□□ 0.29
DEP1YAL013W SIT4P20604 311 aa16.89■□□□□ 0.29
DEP1YAL013W ERT1P38140 529 aa16.87■□□□□ 0.29
DEP1YAL013W ICP55P40051 511 aa16.87■□□□□ 0.29
DEP1YAL013W GCR2Q01722 534 aa16.87■□□□□ 0.29
DEP1YAL013W DPH6Q12429 685 aa16.87■□□□□ 0.29
DEP1YAL013W POM152P39685 1337 aa16.87■□□□□ 0.29
DEP1YAL013W MRPS35P53292 345 aa16.86■□□□□ 0.29
DEP1YAL013W FIG2P25653 1609 aa16.85■□□□□ 0.29
DEP1YAL013W NGR1P32831 672 aaKnown RBP16.85■□□□□ 0.29
DEP1YAL013W BRN1P38170 754 aa16.85■□□□□ 0.29
DEP1YAL013W ERO1Q03103 563 aa16.84■□□□□ 0.29
DEP1YAL013W RPN7Q06103 429 aaKnown RBP16.84■□□□□ 0.29
DEP1YAL013W IRC3Q06683 689 aa16.84■□□□□ 0.29
DEP1YAL013W BRE1Q07457 700 aaKnown RBP16.84■□□□□ 0.29
DEP1YAL013W THI3Q07471 609 aa16.84■□□□□ 0.29
DEP1YAL013W MGM1P32266 881 aa16.83■□□□□ 0.28
DEP1YAL013W FRD1P32614 470 aaKnown RBP16.83■□□□□ 0.28
DEP1YAL013W YNL193WP53870 558 aa16.83■□□□□ 0.28
DEP1YAL013W CAF20P12962 161 aaKnown RBP16.82■□□□□ 0.28
DEP1YAL013W SMY1P32364 656 aaKnown RBP16.82■□□□□ 0.28
DEP1YAL013W EPS1P40557 701 aa16.82■□□□□ 0.28
DEP1YAL013W DLD1P32891 587 aa16.81■□□□□ 0.28
DEP1YAL013W GLO3P38682 493 aaKnown RBP16.81■□□□□ 0.28
DEP1YAL013W HAL5P38970 855 aaKnown RBP16.81■□□□□ 0.28
DEP1YAL013W HKR1P41809 1802 aa16.81■□□□□ 0.28
DEP1YAL013W VAS1P07806 1104 aaKnown RBP16.8■□□□□ 0.28
DEP1YAL013W SPL2P38839 148 aa16.8■□□□□ 0.28
DEP1YAL013W NUG1P40010 520 aaKnown RBP16.8■□□□□ 0.28
DEP1YAL013W MSN5P52918 1224 aa16.8■□□□□ 0.28
DEP1YAL013W RMD1Q03441 430 aa16.8■□□□□ 0.28
DEP1YAL013W YKL222CP35995 705 aa16.79■□□□□ 0.28
DEP1YAL013W RPN1P38764 993 aaKnown RBP16.79■□□□□ 0.28
DEP1YAL013W PIB2P53191 635 aa16.79■□□□□ 0.28
DEP1YAL013W SRC1Q03707 834 aa16.79■□□□□ 0.28
DEP1YAL013W FAS2P19097 1887 aaKnown RBP16.79■□□□□ 0.28
DEP1YAL013W KRE2P27809 442 aa16.78■□□□□ 0.28
DEP1YAL013W RIM20Q12033 661 aa16.78■□□□□ 0.28
DEP1YAL013W PIF1P07271 859 aa16.77■□□□□ 0.28
DEP1YAL013W KTR1P27810 393 aaKnown RBP16.77■□□□□ 0.28
DEP1YAL013W OPY1P38271 328 aa16.77■□□□□ 0.28
DEP1YAL013W EAF6P47128 113 aa16.77■□□□□ 0.28
DEP1YAL013W AAP1P37898 856 aaKnown RBP16.76■□□□□ 0.27
DEP1YAL013W HXT13P39924 564 aa16.76■□□□□ 0.27
DEP1YAL013W HXT17P53631 564 aa16.76■□□□□ 0.27
DEP1YAL013W SAS4Q04003 481 aa16.76■□□□□ 0.27
DEP1YAL013W CTT1P06115 562 aa16.74■□□□□ 0.27
DEP1YAL013W CWH41P53008 833 aa16.74■□□□□ 0.27
DEP1YAL013W KIN4Q01919 800 aa16.74■□□□□ 0.27
Retrieved 100 of 5,963 RNA–protein pairs in 64.3 ms