RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 GRXCR2A6NFK2 248 aa8.92□□□□□ -0.98
SCFD1-223ENST00000557076 PRSS12P56730 875 aa8.92□□□□□ -0.98
SCFD1-223ENST00000557076 CDCA7LQ96GN5 454 aa8.92□□□□□ -0.98
SCFD1-223ENST00000557076 HPS5Q9UPZ3 1129 aa8.92□□□□□ -0.98
SCFD1-223ENST00000557076 GAPVD1Q14C86 1478 aa8.91□□□□□ -0.98
SCFD1-223ENST00000557076 CHD1O14646 1710 aa8.91□□□□□ -0.98
SCFD1-223ENST00000557076 TARBP1Q13395 1621 aaKnown RBP8.91□□□□□ -0.98
SCFD1-223ENST00000557076 CLASP1Q7Z460 1538 aa8.9□□□□□ -0.98
SCFD1-223ENST00000557076 NBPF26B4DH59 902 aa8.9□□□□□ -0.98
SCFD1-223ENST00000557076 KCNC4Q03721 635 aa8.9□□□□□ -0.98
SCFD1-223ENST00000557076 POLA1P09884 1462 aaPredicted RBP8.89□□□□□ -0.99
SCFD1-223ENST00000557076 DNMBPQ6XZF7 1577 aa8.89□□□□□ -0.99
SCFD1-223ENST00000557076 RAD54L2Q9Y4B4 1467 aa8.89□□□□□ -0.99
SCFD1-223ENST00000557076 IRX2Q9BZI1 471 aaPredicted RBP8.88□□□□□ -0.99
SCFD1-223ENST00000557076 RBM27Q9P2N5 1060 aaKnown RBP8.88□□□□□ -0.99
SCFD1-223ENST00000557076 SNAPC4Q5SXM2 1469 aa8.88□□□□□ -0.99
SCFD1-223ENST00000557076 OSBPP22059 807 aa8.87□□□□□ -0.99
SCFD1-223ENST00000557076 PRIM1P49642 420 aaKnown RBP8.87□□□□□ -0.99
SCFD1-223ENST00000557076 PPP4CP60510 307 aa8.87□□□□□ -0.99
SCFD1-223ENST00000557076 MAGI1Q96QZ7 1491 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-223ENST00000557076 SYNJ1O43426 1573 aa8.86□□□□□ -0.99
SCFD1-223ENST00000557076 TATDN2Q93075 761 aa8.86□□□□□ -0.99
SCFD1-223ENST00000557076 SYNJ2O15056 1496 aa8.85□□□□□ -0.99
SCFD1-223ENST00000557076 SAMD7Q7Z3H4 446 aa8.85□□□□□ -0.99
SCFD1-223ENST00000557076 FAM198AQ9UFP1 575 aa8.85□□□□□ -0.99
SCFD1-223ENST00000557076 PNMA3Q9UL41 463 aa8.85□□□□□ -0.99
SCFD1-223ENST00000557076 GRIN2BQ13224 1484 aa8.84□□□□□ -0.99
SCFD1-223ENST00000557076 SMAPO00193 183 aa8.84□□□□□ -0.99
SCFD1-223ENST00000557076 HDGFP51858 240 aaKnown RBP8.84□□□□□ -0.99
SCFD1-223ENST00000557076 FAM69CQ0P6D2 419 aa8.84□□□□□ -0.99
SCFD1-223ENST00000557076 CDHR5Q9HBB8 845 aa8.84□□□□□ -0.99
SCFD1-223ENST00000557076 NECTIN2Q92692 538 aa8.82□□□□□ -1
SCFD1-223ENST00000557076 NUDT18Q6ZVK8 323 aa8.81□□□□□ -1
SCFD1-223ENST00000557076 PRDM2Q13029 1718 aa8.8□□□□□ -1
SCFD1-223ENST00000557076 ARHGEF1Q92888 912 aaKnown RBP8.8□□□□□ -1
SCFD1-223ENST00000557076 WDR97A6NE52 1622 aa8.8□□□□□ -1
SCFD1-223ENST00000557076 TTC13Q8NBP0 860 aa8.79□□□□□ -1
SCFD1-223ENST00000557076 C3orf80F5H4A9 247 aa8.78□□□□□ -1
SCFD1-223ENST00000557076 RNF40O75150 1001 aa8.77□□□□□ -1.01
SCFD1-223ENST00000557076 TJAP1Q5JTD0 557 aa8.77□□□□□ -1.01
SCFD1-223ENST00000557076 PADI6Q6TGC4 694 aa8.77□□□□□ -1.01
SCFD1-223ENST00000557076 IL21Q9HBE4 155 aa8.77□□□□□ -1.01
SCFD1-223ENST00000557076 NPDC1Q9NQX5 325 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-223ENST00000557076 FGD5Q6ZNL6 1462 aa8.77□□□□□ -1.01
SCFD1-223ENST00000557076 SLC4A3P48751 1232 aa8.76□□□□□ -1.01
SCFD1-223ENST00000557076 SLF2Q8IX21 1173 aa8.75□□□□□ -1.01
SCFD1-223ENST00000557076 MTRQ99707 1265 aa8.75□□□□□ -1.01
SCFD1-223ENST00000557076 TSHZ2Q9NRE2 1034 aa8.75□□□□□ -1.01
SCFD1-223ENST00000557076 ABCC10Q5T3U5 1492 aa8.75□□□□□ -1.01
SCFD1-223ENST00000557076 SWT1Q5T5J6 900 aaKnown RBP8.73□□□□□ -1.01
SCFD1-223ENST00000557076 KCNV2Q8TDN2 545 aa8.73□□□□□ -1.01
SCFD1-223ENST00000557076 ERCC6L2Q5T890 1561 aa8.73□□□□□ -1.01
SCFD1-223ENST00000557076 NUP160Q12769 1436 aa8.72□□□□□ -1.01
SCFD1-223ENST00000557076 APLP1P51693 650 aa8.72□□□□□ -1.01
SCFD1-223ENST00000557076 P3H3Q8IVL6 736 aa8.72□□□□□ -1.01
SCFD1-223ENST00000557076 MLLT3P42568 568 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-223ENST00000557076 LAPTM4AQ15012 233 aa8.71□□□□□ -1.02
SCFD1-223ENST00000557076 EYA1Q99502 592 aa8.71□□□□□ -1.02
SCFD1-223ENST00000557076 PRR14Q9BWN1 585 aa8.71□□□□□ -1.02
SCFD1-223ENST00000557076 GRIN2AQ12879 1464 aa8.7□□□□□ -1.02
SCFD1-223ENST00000557076 FBXO41Q8TF61 875 aa8.7□□□□□ -1.02
SCFD1-223ENST00000557076 CUX1P39880 1505 aa8.7□□□□□ -1.02
SCFD1-223ENST00000557076 CEP170Q5SW79 1584 aa8.69□□□□□ -1.02
SCFD1-223ENST00000557076 PTGDRQ13258 359 aa8.69□□□□□ -1.02
SCFD1-223ENST00000557076 PRG4Q92954 1404 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-223ENST00000557076 PPP1R18Q6NYC8 613 aa8.68□□□□□ -1.02
SCFD1-223ENST00000557076 Q6ZNB5 142 aa8.68□□□□□ -1.02
SCFD1-223ENST00000557076 ABCA10Q8WWZ4 1543 aa8.68□□□□□ -1.02
SCFD1-223ENST00000557076 RBM46Q8TBY0 533 aaKnown RBP8.67□□□□□ -1.02
SCFD1-223ENST00000557076 ZNF516Q92618 1163 aa8.67□□□□□ -1.02
SCFD1-223ENST00000557076 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.67□□□□□ -1.02
SCFD1-223ENST00000557076 V9GY48 417 aaPredicted RBP8.67□□□□□ -1.02
SCFD1-223ENST00000557076 KIF13AQ9H1H9 1805 aa8.66□□□□□ -1.02
SCFD1-223ENST00000557076 FHAD1B1AJZ9 1412 aa8.66□□□□□ -1.02
SCFD1-223ENST00000557076 DNAJB2P25686 324 aa8.66□□□□□ -1.02
SCFD1-223ENST00000557076 GGCXP38435 758 aa8.66□□□□□ -1.02
SCFD1-223ENST00000557076 PRKD2Q9BZL6 878 aa8.66□□□□□ -1.02
SCFD1-223ENST00000557076 NUTM2FA1L443 756 aa8.64□□□□□ -1.03
SCFD1-223ENST00000557076 COPS2P61201 443 aa8.64□□□□□ -1.03
SCFD1-223ENST00000557076 MAPKBP1O60336 1514 aa8.64□□□□□ -1.03
SCFD1-223ENST00000557076 PCDHB3Q9Y5E6 796 aa8.63□□□□□ -1.03
SCFD1-223ENST00000557076 ADGRG1Q9Y653 693 aa8.63□□□□□ -1.03
SCFD1-223ENST00000557076 WRNQ14191 1432 aaPredicted RBP eCLIP8.63□□□□□ -1.03
SCFD1-223ENST00000557076 SHROOM2Q13796 1616 aa8.62□□□□□ -1.03
SCFD1-223ENST00000557076 GFRA3O60609 400 aa8.62□□□□□ -1.03
SCFD1-223ENST00000557076 ZPR1O75312 459 aa8.62□□□□□ -1.03
SCFD1-223ENST00000557076 FCHSD2O94868 740 aa8.62□□□□□ -1.03
SCFD1-223ENST00000557076 TMUB1Q9BVT8 246 aa8.62□□□□□ -1.03
SCFD1-223ENST00000557076 TMEM134Q9H6X4 195 aa8.62□□□□□ -1.03
SCFD1-223ENST00000557076 KDM6BO15054 1643 aa8.62□□□□□ -1.03
SCFD1-223ENST00000557076 NKX2-3Q8TAU0 364 aa8.61□□□□□ -1.03
SCFD1-223ENST00000557076 ADGRL1O94910 1474 aa8.6□□□□□ -1.03
SCFD1-223ENST00000557076 NRG2O14511 850 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-223ENST00000557076 KMT5BQ4FZB7 885 aa8.6□□□□□ -1.03
SCFD1-223ENST00000557076 ABCA5Q8WWZ7 1642 aa8.59□□□□□ -1.03
SCFD1-223ENST00000557076 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.59□□□□□ -1.03
SCFD1-223ENST00000557076 RCCD1A6NED2 376 aa8.59□□□□□ -1.03
SCFD1-223ENST00000557076 DIP2BQ9P265 1576 aa8.59□□□□□ -1.03
SCFD1-223ENST00000557076 SEMA3EO15041 775 aa8.58□□□□□ -1.04
SCFD1-223ENST00000557076 PBRM1Q86U86 1689 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms