RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 AEBP2Q6ZN18 517 aaPredicted RBP22.32■■□□□ 1.16
SCFD1-223ENST00000557076 CHIC1Q5VXU3 224 aa21.3■■□□□ 1
SCFD1-223ENST00000557076 SENP3Q9H4L4 574 aaPredicted RBP19.13■□□□□ 0.65
SCFD1-223ENST00000557076 PHF23Q9BUL5 403 aaPredicted RBP18.84■□□□□ 0.61
SCFD1-223ENST00000557076 FOXD1Q16676 465 aa17.76■□□□□ 0.43
SCFD1-223ENST00000557076 PLPPR3Q6T4P5 718 aa17.07■□□□□ 0.32
SCFD1-223ENST00000557076 MSH5O43196 834 aa16.69■□□□□ 0.26
SCFD1-223ENST00000557076 PIAS4Q8N2W9 510 aaPredicted RBP16.64■□□□□ 0.25
SCFD1-223ENST00000557076 PPP6R1Q9UPN7 881 aa16.6■□□□□ 0.25
SCFD1-223ENST00000557076 ADRA2BP18089 450 aa16.55■□□□□ 0.24
SCFD1-223ENST00000557076 POTEDQ86YR6 584 aa16.15■□□□□ 0.18
SCFD1-223ENST00000557076 SCAF1Q9H7N4 1312 aaKnown RBP15.27■□□□□ 0.04
SCFD1-223ENST00000557076 MAPK8IP2Q13387 824 aaPredicted RBP15.17■□□□□ 0.02
SCFD1-223ENST00000557076 DMRT2Q9Y5R5 561 aa15.16■□□□□ 0.02
SCFD1-223ENST00000557076 PPP4R3CPQ6ZMV5 832 aa14.93□□□□□ -0.02
SCFD1-223ENST00000557076 CNKSR2Q8WXI2 1034 aa14.67□□□□□ -0.06
SCFD1-223ENST00000557076 HOXD11P31277 338 aaPredicted RBP14.62□□□□□ -0.07
SCFD1-223ENST00000557076 RNF216Q9NWF9 866 aaPredicted RBP14.54□□□□□ -0.08
SCFD1-223ENST00000557076 DCAF8L1A6NGE4 600 aa14.51□□□□□ -0.09
SCFD1-223ENST00000557076 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
SCFD1-223ENST00000557076 CACNB1Q02641 598 aaPredicted RBP14.26□□□□□ -0.13
SCFD1-223ENST00000557076 RNF39Q9H2S5 420 aa14.2□□□□□ -0.14
SCFD1-223ENST00000557076 DNAJC5BQ9UF47 199 aa14.17□□□□□ -0.14
SCFD1-223ENST00000557076 NPM3O75607 178 aaKnown RBP14.15□□□□□ -0.14
SCFD1-223ENST00000557076 C1QBPQ07021 282 aaKnown RBP14.04□□□□□ -0.16
SCFD1-223ENST00000557076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.92□□□□□ -0.18
SCFD1-223ENST00000557076 KCNA4P22459 653 aa13.89□□□□□ -0.19
SCFD1-223ENST00000557076 U3KPZ7 1027 aaPredicted RBP13.61□□□□□ -0.23
SCFD1-223ENST00000557076 SLC4A2P04920 1241 aa13.48□□□□□ -0.25
SCFD1-223ENST00000557076 CAPN15O75808 1086 aa13.39□□□□□ -0.27
SCFD1-223ENST00000557076 SPINK5Q9NQ38 1064 aaPredicted RBP13.38□□□□□ -0.27
SCFD1-223ENST00000557076 APLP2Q06481 763 aa13.36□□□□□ -0.27
SCFD1-223ENST00000557076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.34□□□□□ -0.27
SCFD1-223ENST00000557076 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
SCFD1-223ENST00000557076 DSG3P32926 999 aa13.3□□□□□ -0.28
SCFD1-223ENST00000557076 SAMD1Q6SPF0 538 aaPredicted RBP13.23□□□□□ -0.29
SCFD1-223ENST00000557076 ZNF219Q9P2Y4 722 aaPredicted RBP13.22□□□□□ -0.29
SCFD1-223ENST00000557076 TRHP20396 242 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-223ENST00000557076 SLC4A1APQ9BWU0 796 aaKnown RBP13.15□□□□□ -0.3
SCFD1-223ENST00000557076 MYCNP04198 464 aaPredicted RBP13.14□□□□□ -0.31
SCFD1-223ENST00000557076 ABCB7O75027 752 aa13.05□□□□□ -0.32
SCFD1-223ENST00000557076 FOXD4L1Q9NU39 408 aa13.01□□□□□ -0.33
SCFD1-223ENST00000557076 POLA2Q14181 598 aa12.83□□□□□ -0.36
SCFD1-223ENST00000557076 RBM42Q9BTD8 480 aaKnown RBP12.77□□□□□ -0.37
SCFD1-223ENST00000557076 ZBTB22O15209 634 aa12.73□□□□□ -0.37
SCFD1-223ENST00000557076 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
SCFD1-223ENST00000557076 POTEHQ6S545 545 aa12.69□□□□□ -0.38
SCFD1-223ENST00000557076 ZBTB12Q9Y330 459 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-223ENST00000557076 ATXN8OSP0DMR3 200 aa12.64□□□□□ -0.39
SCFD1-223ENST00000557076 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
SCFD1-223ENST00000557076 OSCARQ8IYS5 282 aa12.42□□□□□ -0.42
SCFD1-223ENST00000557076 CHRDL2Q6WN34 429 aa12.41□□□□□ -0.42
SCFD1-223ENST00000557076 FBLN2P98095 1184 aa12.35□□□□□ -0.43
SCFD1-223ENST00000557076 REM2Q8IYK8 340 aaPredicted RBP12.3□□□□□ -0.44
SCFD1-223ENST00000557076 SPDYE2BA6NHP3 402 aa12.24□□□□□ -0.45
SCFD1-223ENST00000557076 SPDYE6P0CI01 402 aa12.24□□□□□ -0.45
SCFD1-223ENST00000557076 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
SCFD1-223ENST00000557076 CSRNP3Q8WYN3 585 aa12.21□□□□□ -0.45
SCFD1-223ENST00000557076 MKRN4PQ13434 485 aaPredicted RBP12.17□□□□□ -0.46
SCFD1-223ENST00000557076 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
SCFD1-223ENST00000557076 PIP4P2Q8N4L2 257 aa12.1□□□□□ -0.47
SCFD1-223ENST00000557076 FXR2P51116 673 aaKnown RBP eCLIP12.07□□□□□ -0.48
SCFD1-223ENST00000557076 EHMT2Q96KQ7 1210 aa12.07□□□□□ -0.48
SCFD1-223ENST00000557076 ZNF692Q9BU19 519 aaPredicted RBP12.07□□□□□ -0.48
SCFD1-223ENST00000557076 SSUH2Q9Y2M2 353 aa12.06□□□□□ -0.48
SCFD1-223ENST00000557076 NISCHQ9Y2I1 1504 aa12.03□□□□□ -0.48
SCFD1-223ENST00000557076 SPDYE1Q8NFV5 336 aaPredicted RBP12.02□□□□□ -0.49
SCFD1-223ENST00000557076 CLEC11AQ9Y240 323 aa11.96□□□□□ -0.49
SCFD1-223ENST00000557076 SP7Q8TDD2 431 aaPredicted RBP11.92□□□□□ -0.5
SCFD1-223ENST00000557076 HAX1O00165 279 aa11.89□□□□□ -0.51
SCFD1-223ENST00000557076 PABPN1Q86U42 306 aaKnown RBP eCLIP11.88□□□□□ -0.51
SCFD1-223ENST00000557076 PRKAR2AP13861 404 aaKnown RBP11.85□□□□□ -0.51
SCFD1-223ENST00000557076 PRR29P0C7W0 189 aa11.79□□□□□ -0.52
SCFD1-223ENST00000557076 CHADLQ6NUI6 762 aa11.69□□□□□ -0.54
SCFD1-223ENST00000557076 C19orf67A6NJJ6 358 aa11.67□□□□□ -0.54
SCFD1-223ENST00000557076 EVX2Q03828 476 aa11.67□□□□□ -0.54
SCFD1-223ENST00000557076 SPDYE4A6NLX3 237 aa11.66□□□□□ -0.54
SCFD1-223ENST00000557076 STAG3Q9UJ98 1225 aa11.64□□□□□ -0.55
SCFD1-223ENST00000557076 FARP1Q9Y4F1 1045 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-223ENST00000557076 CD44P16070 742 aaKnown RBP11.49□□□□□ -0.57
SCFD1-223ENST00000557076 GABBR2O75899 941 aa11.47□□□□□ -0.57
SCFD1-223ENST00000557076 CREBZFQ9NS37 354 aa11.47□□□□□ -0.57
SCFD1-223ENST00000557076 CLCN6P51797 869 aa11.42□□□□□ -0.58
SCFD1-223ENST00000557076 PROM2Q8N271 834 aa11.38□□□□□ -0.59
SCFD1-223ENST00000557076 NPM1P06748 294 aaKnown RBP eCLIP11.33□□□□□ -0.6
SCFD1-223ENST00000557076 ZNF579Q8NAF0 562 aaKnown RBP11.33□□□□□ -0.6
SCFD1-223ENST00000557076 ZRANB1Q9UGI0 708 aa11.33□□□□□ -0.6
SCFD1-223ENST00000557076 ABCC9O60706 1549 aa11.32□□□□□ -0.6
SCFD1-223ENST00000557076 PAK3O75914 559 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-223ENST00000557076 MNX1P50219 401 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-223ENST00000557076 DCBLD2Q96PD2 775 aa11.21□□□□□ -0.61
SCFD1-223ENST00000557076 POTEIP0CG38 1075 aa11.2□□□□□ -0.62
SCFD1-223ENST00000557076 PLEKHG5O94827 1062 aa11.19□□□□□ -0.62
SCFD1-223ENST00000557076 LHX8Q68G74 356 aa11.18□□□□□ -0.62
SCFD1-223ENST00000557076 GALR2O43603 387 aaPredicted RBP11.15□□□□□ -0.62
SCFD1-223ENST00000557076 PHF12Q96QT6 1004 aa11.14□□□□□ -0.63
SCFD1-223ENST00000557076 MIER1Q8N108 512 aa11.12□□□□□ -0.63
SCFD1-223ENST00000557076 FKBP8Q14318 412 aa11.1□□□□□ -0.63
SCFD1-223ENST00000557076 TSPYL2Q9H2G4 693 aaPredicted RBP11.06□□□□□ -0.64
SCFD1-223ENST00000557076 PLCD3Q8N3E9 789 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms