RNA–Protein interactions for RNA: ENST00000554592.5

ATXN3-228, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-228ENST00000554592 RIMBP3CA6NJZ7 1639 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 RIMBP3BA6NNM3 1639 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 RIMBP3Q9UFD9 1639 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 ARHGEF11O15085 1522 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 GOLGA8CPA6NN73 597 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 FCHSD2O94868 740 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 NUDT18Q6ZVK8 323 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 PNMA3Q9UL41 463 aa9.17□□□□□ -0.94
ATXN3-228ENST00000554592 IFT140Q96RY7 1462 aa9.16□□□□□ -0.94
ATXN3-228ENST00000554592 NBPF26B4DH59 902 aa9.16□□□□□ -0.94
ATXN3-228ENST00000554592 EYA1Q99502 592 aa9.16□□□□□ -0.94
ATXN3-228ENST00000554592 WIZO95785 1651 aa9.16□□□□□ -0.94
ATXN3-228ENST00000554592 SOWAHBA6NEL2 793 aa9.15□□□□□ -0.94
ATXN3-228ENST00000554592 ZNF608Q9ULD9 1512 aaPredicted RBP9.15□□□□□ -0.95
ATXN3-228ENST00000554592 FECHP22830 423 aa9.14□□□□□ -0.95
ATXN3-228ENST00000554592 BCAMP50895 628 aa9.14□□□□□ -0.95
ATXN3-228ENST00000554592 HIC1Q14526 733 aa9.14□□□□□ -0.95
ATXN3-228ENST00000554592 ANKK1Q8NFD2 765 aa9.14□□□□□ -0.95
ATXN3-228ENST00000554592 PTPN5P54829 565 aa9.13□□□□□ -0.95
ATXN3-228ENST00000554592 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.13□□□□□ -0.95
ATXN3-228ENST00000554592 ADGRG1Q9Y653 693 aa9.13□□□□□ -0.95
ATXN3-228ENST00000554592 RSF1Q96T23 1441 aaPredicted RBP9.13□□□□□ -0.95
ATXN3-228ENST00000554592 TPRNQ4KMQ1 711 aa9.12□□□□□ -0.95
ATXN3-228ENST00000554592 FAM161AQ3B820 660 aa9.11□□□□□ -0.95
ATXN3-228ENST00000554592 PLA2G2EQ9NZK7 142 aa9.11□□□□□ -0.95
ATXN3-228ENST00000554592 GNPATO15228 680 aa9.1□□□□□ -0.95
ATXN3-228ENST00000554592 SAMD7Q7Z3H4 446 aa9.1□□□□□ -0.95
ATXN3-228ENST00000554592 GPIHBP1Q8IV16 184 aa9.1□□□□□ -0.95
ATXN3-228ENST00000554592 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.09□□□□□ -0.95
ATXN3-228ENST00000554592 LRCH3Q96II8 777 aa9.08□□□□□ -0.96
ATXN3-228ENST00000554592 WBP1LQ9NX94 342 aa9.08□□□□□ -0.96
ATXN3-228ENST00000554592 AQRO60306 1485 aaKnown RBP eCLIP9.08□□□□□ -0.96
ATXN3-228ENST00000554592 ABCC8Q09428 1581 aa9.07□□□□□ -0.96
ATXN3-228ENST00000554592 TOP2AP11388 1531 aaKnown RBP9.07□□□□□ -0.96
ATXN3-228ENST00000554592 ARAP1Q96P48 1450 aa9.07□□□□□ -0.96
ATXN3-228ENST00000554592 TOPBP1Q92547 1522 aa9.06□□□□□ -0.96
ATXN3-228ENST00000554592 RBM46Q8TBY0 533 aaKnown RBP9.06□□□□□ -0.96
ATXN3-228ENST00000554592 PXYLP1Q8TE99 480 aa9.06□□□□□ -0.96
ATXN3-228ENST00000554592 TSR3Q9UJK0 312 aaKnown RBP9.06□□□□□ -0.96
ATXN3-228ENST00000554592 SWT1Q5T5J6 900 aaKnown RBP9.05□□□□□ -0.96
ATXN3-228ENST00000554592 HPS5Q9UPZ3 1129 aa9.05□□□□□ -0.96
ATXN3-228ENST00000554592 RCCD1A6NED2 376 aa9.04□□□□□ -0.96
ATXN3-228ENST00000554592 TULP1O00294 542 aaPredicted RBP9.04□□□□□ -0.96
ATXN3-228ENST00000554592 LMOD2Q6P5Q4 547 aa9.04□□□□□ -0.96
ATXN3-228ENST00000554592 METTL3Q86U44 580 aaKnown RBP9.04□□□□□ -0.96
ATXN3-228ENST00000554592 CHMP7Q8WUX9 453 aaPredicted RBP9.04□□□□□ -0.96
ATXN3-228ENST00000554592 CCDC88BA6NC98 1476 aa9.03□□□□□ -0.96
ATXN3-228ENST00000554592 OATP04181 439 aa9.03□□□□□ -0.96
ATXN3-228ENST00000554592 DNAJB2P25686 324 aa9.03□□□□□ -0.96
ATXN3-228ENST00000554592 PHOX2BQ99453 314 aa9.03□□□□□ -0.96
ATXN3-228ENST00000554592 TMEM134Q9H6X4 195 aa9.03□□□□□ -0.96
ATXN3-228ENST00000554592 NYAP1Q6ZVC0 841 aa9.02□□□□□ -0.97
ATXN3-228ENST00000554592 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9□□□□□ -0.97
ATXN3-228ENST00000554592 PPP4CP60510 307 aa9□□□□□ -0.97
ATXN3-228ENST00000554592 TDRD9Q8NDG6 1382 aaKnown RBP8.99□□□□□ -0.97
ATXN3-228ENST00000554592 HDGFP51858 240 aaKnown RBP8.99□□□□□ -0.97
ATXN3-228ENST00000554592 IFFO2Q5TF58 517 aa8.99□□□□□ -0.97
ATXN3-228ENST00000554592 EIF4G3O43432 1585 aaKnown RBP8.99□□□□□ -0.97
ATXN3-228ENST00000554592 SOGA1O94964 1423 aa8.98□□□□□ -0.97
ATXN3-228ENST00000554592 ITGBL1O95965 494 aaPredicted RBP8.98□□□□□ -0.97
ATXN3-228ENST00000554592 MAP2K5Q13163 448 aa8.98□□□□□ -0.97
ATXN3-228ENST00000554592 SLF2Q8IX21 1173 aa8.98□□□□□ -0.97
ATXN3-228ENST00000554592 IRF6O14896 467 aa8.97□□□□□ -0.97
ATXN3-228ENST00000554592 APLP1P51693 650 aa8.97□□□□□ -0.97
ATXN3-228ENST00000554592 ZC3H15Q8WU90 426 aaKnown RBP8.97□□□□□ -0.97
ATXN3-228ENST00000554592 DNMBPQ6XZF7 1577 aa8.97□□□□□ -0.97
ATXN3-228ENST00000554592 ZMYND10O75800 440 aa8.96□□□□□ -0.98
ATXN3-228ENST00000554592 SLC10A3P09131 477 aa8.96□□□□□ -0.98
ATXN3-228ENST00000554592 MINK1Q8N4C8 1332 aaPredicted RBP8.96□□□□□ -0.98
ATXN3-228ENST00000554592 POLA1P09884 1462 aaPredicted RBP8.96□□□□□ -0.98
ATXN3-228ENST00000554592 BARGINQ6ZT62 677 aa8.95□□□□□ -0.98
ATXN3-228ENST00000554592 NLRP7Q8WX94 980 aa8.95□□□□□ -0.98
ATXN3-228ENST00000554592 RAD54L2Q9Y4B4 1467 aa8.95□□□□□ -0.98
ATXN3-228ENST00000554592 TARBP1Q13395 1621 aaKnown RBP8.94□□□□□ -0.98
ATXN3-228ENST00000554592 RNF40O75150 1001 aa8.94□□□□□ -0.98
ATXN3-228ENST00000554592 TJAP1Q5JTD0 557 aa8.93□□□□□ -0.98
ATXN3-228ENST00000554592 DAXXQ9UER7 740 aaPredicted RBP8.93□□□□□ -0.98
ATXN3-228ENST00000554592 SNAPC4Q5SXM2 1469 aa8.92□□□□□ -0.98
ATXN3-228ENST00000554592 NECTIN2Q92692 538 aa8.92□□□□□ -0.98
ATXN3-228ENST00000554592 CCDC102AQ96A19 550 aa8.92□□□□□ -0.98
ATXN3-228ENST00000554592 CHD1O14646 1710 aa8.91□□□□□ -0.98
ATXN3-228ENST00000554592 MAGI1Q96QZ7 1491 aaPredicted RBP8.9□□□□□ -0.98
ATXN3-228ENST00000554592 CLASP1Q7Z460 1538 aa8.9□□□□□ -0.99
ATXN3-228ENST00000554592 GRIN2BQ13224 1484 aa8.89□□□□□ -0.99
ATXN3-228ENST00000554592 GAPVD1Q14C86 1478 aa8.89□□□□□ -0.99
ATXN3-228ENST00000554592 SLC4A3P48751 1232 aa8.89□□□□□ -0.99
ATXN3-228ENST00000554592 MTRQ99707 1265 aa8.89□□□□□ -0.99
ATXN3-228ENST00000554592 TMUB1Q9BVT8 246 aa8.89□□□□□ -0.99
ATXN3-228ENST00000554592 SYNJ1O43426 1573 aa8.89□□□□□ -0.99
ATXN3-228ENST00000554592 SYNJ2O15056 1496 aa8.89□□□□□ -0.99
ATXN3-228ENST00000554592 KCNC4Q03721 635 aa8.88□□□□□ -0.99
ATXN3-228ENST00000554592 PRDM2Q13029 1718 aa8.88□□□□□ -0.99
ATXN3-228ENST00000554592 ACTN4O43707 911 aaKnown RBP8.87□□□□□ -0.99
ATXN3-228ENST00000554592 CFHP08603 1231 aa8.87□□□□□ -0.99
ATXN3-228ENST00000554592 ZNF516Q92618 1163 aa8.87□□□□□ -0.99
ATXN3-228ENST00000554592 FGD5Q6ZNL6 1462 aa8.86□□□□□ -0.99
ATXN3-228ENST00000554592 A0A0G2JS52 829 aa8.86□□□□□ -0.99
ATXN3-228ENST00000554592 IL21Q9HBE4 155 aa8.86□□□□□ -0.99
ATXN3-228ENST00000554592 REPIN1Q9BWE0 567 aaKnown RBP8.85□□□□□ -0.99
ATXN3-228ENST00000554592 PRR14Q9BWN1 585 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms