RNA–Protein interactions for RNA: ENST00000554592.5

ATXN3-228, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-228ENST00000554592 AEBP2Q6ZN18 517 aaPredicted RBP22.26■■□□□ 1.15
ATXN3-228ENST00000554592 CHIC1Q5VXU3 224 aa21.49■■□□□ 1.03
ATXN3-228ENST00000554592 PHF23Q9BUL5 403 aaPredicted RBP18.93■□□□□ 0.62
ATXN3-228ENST00000554592 SENP3Q9H4L4 574 aaPredicted RBP18.81■□□□□ 0.6
ATXN3-228ENST00000554592 FOXD1Q16676 465 aa17.56■□□□□ 0.4
ATXN3-228ENST00000554592 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
ATXN3-228ENST00000554592 PPP6R1Q9UPN7 881 aa16.77■□□□□ 0.28
ATXN3-228ENST00000554592 ADRA2BP18089 450 aa16.69■□□□□ 0.26
ATXN3-228ENST00000554592 PIAS4Q8N2W9 510 aaPredicted RBP16.43■□□□□ 0.22
ATXN3-228ENST00000554592 MSH5O43196 834 aa16.32■□□□□ 0.2
ATXN3-228ENST00000554592 POTEDQ86YR6 584 aa16.12■□□□□ 0.17
ATXN3-228ENST00000554592 PPP4R3CPQ6ZMV5 832 aa15.25■□□□□ 0.03
ATXN3-228ENST00000554592 MAPK8IP2Q13387 824 aaPredicted RBP15.23■□□□□ 0.03
ATXN3-228ENST00000554592 SCAF1Q9H7N4 1312 aaKnown RBP15.18■□□□□ 0.02
ATXN3-228ENST00000554592 DMRT2Q9Y5R5 561 aa15.03■□□□□ -0
ATXN3-228ENST00000554592 CNKSR2Q8WXI2 1034 aa14.86□□□□□ -0.03
ATXN3-228ENST00000554592 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
ATXN3-228ENST00000554592 KCNA4P22459 653 aa14.69□□□□□ -0.06
ATXN3-228ENST00000554592 HOXD11P31277 338 aaPredicted RBP14.66□□□□□ -0.06
ATXN3-228ENST00000554592 RNF216Q9NWF9 866 aaPredicted RBP14.63□□□□□ -0.07
ATXN3-228ENST00000554592 NPM3O75607 178 aaKnown RBP14.6□□□□□ -0.07
ATXN3-228ENST00000554592 DNAJC5BQ9UF47 199 aa14.28□□□□□ -0.12
ATXN3-228ENST00000554592 DCAF8L1A6NGE4 600 aa14.26□□□□□ -0.13
ATXN3-228ENST00000554592 CACNB1Q02641 598 aaPredicted RBP14.1□□□□□ -0.15
ATXN3-228ENST00000554592 RNF39Q9H2S5 420 aa13.92□□□□□ -0.18
ATXN3-228ENST00000554592 SLC4A1APQ9BWU0 796 aaKnown RBP13.89□□□□□ -0.19
ATXN3-228ENST00000554592 SLC4A2P04920 1241 aa13.87□□□□□ -0.19
ATXN3-228ENST00000554592 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.86□□□□□ -0.19
ATXN3-228ENST00000554592 U3KPZ7 1027 aaPredicted RBP13.71□□□□□ -0.21
ATXN3-228ENST00000554592 C1QBPQ07021 282 aaKnown RBP13.69□□□□□ -0.22
ATXN3-228ENST00000554592 ZBTB22O15209 634 aa13.56□□□□□ -0.24
ATXN3-228ENST00000554592 FOXD4L1Q9NU39 408 aa13.53□□□□□ -0.24
ATXN3-228ENST00000554592 MYCNP04198 464 aaPredicted RBP13.44□□□□□ -0.26
ATXN3-228ENST00000554592 SPINK5Q9NQ38 1064 aaPredicted RBP13.38□□□□□ -0.27
ATXN3-228ENST00000554592 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.36□□□□□ -0.27
ATXN3-228ENST00000554592 HNRNPUL2Q1KMD3 747 aaKnown RBP13.36□□□□□ -0.27
ATXN3-228ENST00000554592 SAMD1Q6SPF0 538 aaPredicted RBP13.33□□□□□ -0.28
ATXN3-228ENST00000554592 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
ATXN3-228ENST00000554592 CAPN15O75808 1086 aa13.26□□□□□ -0.29
ATXN3-228ENST00000554592 APLP2Q06481 763 aa13.24□□□□□ -0.29
ATXN3-228ENST00000554592 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
ATXN3-228ENST00000554592 ATF5Q9Y2D1 282 aaPredicted RBP13.19□□□□□ -0.3
ATXN3-228ENST00000554592 DSG3P32926 999 aa13.17□□□□□ -0.3
ATXN3-228ENST00000554592 TRHP20396 242 aaPredicted RBP13.15□□□□□ -0.3
ATXN3-228ENST00000554592 ZNF219Q9P2Y4 722 aaPredicted RBP13.15□□□□□ -0.3
ATXN3-228ENST00000554592 ATXN8OSP0DMR3 200 aa13.1□□□□□ -0.31
ATXN3-228ENST00000554592 ABCB7O75027 752 aa13.01□□□□□ -0.33
ATXN3-228ENST00000554592 POLA2Q14181 598 aa12.93□□□□□ -0.34
ATXN3-228ENST00000554592 ZBTB12Q9Y330 459 aaPredicted RBP12.64□□□□□ -0.39
ATXN3-228ENST00000554592 POTEHQ6S545 545 aa12.62□□□□□ -0.39
ATXN3-228ENST00000554592 MKRN4PQ13434 485 aaPredicted RBP12.6□□□□□ -0.39
ATXN3-228ENST00000554592 FBLN2P98095 1184 aa12.5□□□□□ -0.41
ATXN3-228ENST00000554592 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
ATXN3-228ENST00000554592 RBM42Q9BTD8 480 aaKnown RBP12.46□□□□□ -0.41
ATXN3-228ENST00000554592 SPDYE2BA6NHP3 402 aa12.33□□□□□ -0.44
ATXN3-228ENST00000554592 SPDYE6P0CI01 402 aa12.33□□□□□ -0.44
ATXN3-228ENST00000554592 SPDYE2Q495Y8 402 aa12.33□□□□□ -0.44
ATXN3-228ENST00000554592 AKT1S1Q96B36 256 aa12.31□□□□□ -0.44
ATXN3-228ENST00000554592 SSUH2Q9Y2M2 353 aa12.27□□□□□ -0.45
ATXN3-228ENST00000554592 ZNF692Q9BU19 519 aaPredicted RBP12.24□□□□□ -0.45
ATXN3-228ENST00000554592 REM2Q8IYK8 340 aaPredicted RBP12.21□□□□□ -0.45
ATXN3-228ENST00000554592 CHRDL2Q6WN34 429 aa12.18□□□□□ -0.46
ATXN3-228ENST00000554592 NISCHQ9Y2I1 1504 aa12.16□□□□□ -0.46
ATXN3-228ENST00000554592 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
ATXN3-228ENST00000554592 PITPNM1O00562 1244 aa12.08□□□□□ -0.48
ATXN3-228ENST00000554592 PABPN1Q86U42 306 aaKnown RBP eCLIP12.08□□□□□ -0.48
ATXN3-228ENST00000554592 PROM2Q8N271 834 aa12.01□□□□□ -0.49
ATXN3-228ENST00000554592 SPDYE1Q8NFV5 336 aaPredicted RBP11.99□□□□□ -0.49
ATXN3-228ENST00000554592 FKBP8Q14318 412 aa11.94□□□□□ -0.5
ATXN3-228ENST00000554592 CLEC11AQ9Y240 323 aa11.93□□□□□ -0.5
ATXN3-228ENST00000554592 FXR2P51116 673 aaKnown RBP eCLIP11.92□□□□□ -0.5
ATXN3-228ENST00000554592 PIP4P2Q8N4L2 257 aa11.9□□□□□ -0.5
ATXN3-228ENST00000554592 PRR29P0C7W0 189 aa11.81□□□□□ -0.52
ATXN3-228ENST00000554592 STAG3Q9UJ98 1225 aa11.81□□□□□ -0.52
ATXN3-228ENST00000554592 SP7Q8TDD2 431 aaPredicted RBP11.77□□□□□ -0.53
ATXN3-228ENST00000554592 PRKAR2AP13861 404 aaKnown RBP11.74□□□□□ -0.53
ATXN3-228ENST00000554592 CHADLQ6NUI6 762 aa11.72□□□□□ -0.53
ATXN3-228ENST00000554592 HAX1O00165 279 aa11.71□□□□□ -0.53
ATXN3-228ENST00000554592 CREBZFQ9NS37 354 aa11.69□□□□□ -0.54
ATXN3-228ENST00000554592 MNX1P50219 401 aaPredicted RBP11.59□□□□□ -0.55
ATXN3-228ENST00000554592 FARP1Q9Y4F1 1045 aaPredicted RBP11.58□□□□□ -0.56
ATXN3-228ENST00000554592 FBXO3Q9UK99 471 aa11.54□□□□□ -0.56
ATXN3-228ENST00000554592 C19orf67A6NJJ6 358 aa11.52□□□□□ -0.57
ATXN3-228ENST00000554592 EVX2Q03828 476 aa11.52□□□□□ -0.57
ATXN3-228ENST00000554592 MIER1Q8N108 512 aa11.49□□□□□ -0.57
ATXN3-228ENST00000554592 VASPP50552 380 aaPredicted RBP11.43□□□□□ -0.58
ATXN3-228ENST00000554592 PLCD3Q8N3E9 789 aa11.42□□□□□ -0.58
ATXN3-228ENST00000554592 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
ATXN3-228ENST00000554592 CD44P16070 742 aaKnown RBP11.38□□□□□ -0.59
ATXN3-228ENST00000554592 PLEKHG5O94827 1062 aa11.37□□□□□ -0.59
ATXN3-228ENST00000554592 IFNLR1Q8IU57 520 aaPredicted RBP11.32□□□□□ -0.6
ATXN3-228ENST00000554592 NUBP1P53384 320 aa11.31□□□□□ -0.6
ATXN3-228ENST00000554592 ZBTB47Q9UFB7 747 aaPredicted RBP11.31□□□□□ -0.6
ATXN3-228ENST00000554592 RASEFQ8IZ41 740 aa11.3□□□□□ -0.6
ATXN3-228ENST00000554592 ABCC9O60706 1549 aa11.29□□□□□ -0.6
ATXN3-228ENST00000554592 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
ATXN3-228ENST00000554592 GABBR2O75899 941 aa11.26□□□□□ -0.61
ATXN3-228ENST00000554592 ZNF579Q8NAF0 562 aaKnown RBP11.26□□□□□ -0.61
ATXN3-228ENST00000554592 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
ATXN3-228ENST00000554592 CCDC61Q9Y6R9 512 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms