RNA–Protein interactions for RNA: YMR240C

CUS1, Transcript of Protein required for assembly of U2 snRNP into the spliceosome, yeast

Gene CUS1, Length 1,311 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUS1	YMR240C	BMT5	P40493	336 aa		3	□□□□□ -1.93
CUS1	YMR240C	SMD3	P43321	101 aa	Known RBP	3	□□□□□ -1.93
CUS1	YMR240C	BXI1	P48558	297 aa		3	□□□□□ -1.93
CUS1	YMR240C	SWR1	Q05471	1514 aa		3	□□□□□ -1.93
CUS1	YMR240C	HIR3	P47171	1648 aa		3	□□□□□ -1.93
CUS1	YMR240C	SPT6	P23615	1451 aa	Known RBP	2.99	□□□□□ -1.93
CUS1	YMR240C	YHR032W-A	P0C5N6	59 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	FCY2	P17064	533 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	DBF2	P22204	572 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	SCO1	P23833	295 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	CAF4	P36130	643 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	YBR063C	P38083	404 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	ECM33	P38248	429 aa	Known RBP	2.99	□□□□□ -1.93
CUS1	YMR240C	YAR068W	P39564	161 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	FAR7	P43592	221 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	COS6	P53344	381 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	ATG39	Q06159	398 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	SUE1	Q06524	206 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	BRX1	Q08235	291 aa	Known RBP	2.99	□□□□□ -1.93
CUS1	YMR240C	DRS2	P39524	1355 aa		2.99	□□□□□ -1.93
CUS1	YMR240C	MAK5	P38112	773 aa	Predicted RBP	2.98	□□□□□ -1.93
CUS1	YMR240C	AME1	P38313	324 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	CTR2	P38865	189 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	PRM8	P53174	237 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	YIP3	P53633	176 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	PDR17	P53844	350 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	SLM2	P53955	656 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	YMD8	Q03697	442 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	YDR248C	Q03786	193 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	GRE1	Q08969	168 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	AKR2	Q12013	749 aa		2.98	□□□□□ -1.93
CUS1	YMR240C	THO2	P53552	1597 aa	Known RBP	2.98	□□□□□ -1.93
CUS1	YMR240C	FIG1	P38224	298 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	POP7	P38291	140 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	DOG2	P38773	246 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	DOG1	P38774	246 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	MED6	P38782	295 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	DSK2	P48510	373 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	YNL010W	P53981	241 aa	Known RBP	2.97	□□□□□ -1.93
CUS1	YMR240C	TUS1	Q06412	1307 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	ESP1	Q03018	1630 aa		2.97	□□□□□ -1.93
CUS1	YMR240C	TRR1	P29509	319 aa	Known RBP	2.96	□□□□□ -1.93
CUS1	YMR240C	APS1	P35181	156 aa		2.96	□□□□□ -1.93
CUS1	YMR240C	YCR087C-A	P37263	153 aa		2.96	□□□□□ -1.93
CUS1	YMR240C	IRC22	P40006	225 aa		2.96	□□□□□ -1.93
CUS1	YMR240C	SNX4	P47057	423 aa		2.96	□□□□□ -1.93
CUS1	YMR240C	SPC2	Q04969	178 aa		2.96	□□□□□ -1.93
CUS1	YMR240C	PUT1	P09368	476 aa		2.95	□□□□□ -1.94
CUS1	YMR240C	OAC1	P32332	324 aa		2.95	□□□□□ -1.94
CUS1	YMR240C	SRP102	P36057	244 aa	Predicted RBP	2.95	□□□□□ -1.94
CUS1	YMR240C	YER121W	P40076	114 aa		2.95	□□□□□ -1.94
CUS1	YMR240C	LSM1	P47017	172 aa	Known RBP	2.95	□□□□□ -1.94
CUS1	YMR240C	MMS2	P53152	137 aa		2.95	□□□□□ -1.94
CUS1	YMR240C	YNL140C	P53910	189 aa		2.95	□□□□□ -1.94
CUS1	YMR240C	FKS1	P38631	1876 aa	Known RBP	2.95	□□□□□ -1.94
CUS1	YMR240C	RPL9A	P05738	191 aa	Known RBP	2.94	□□□□□ -1.94
CUS1	YMR240C	GCN3	P14741	305 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	GRX2	P17695	143 aa	Known RBP	2.94	□□□□□ -1.94
CUS1	YMR240C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	2.94	□□□□□ -1.94	not detected
CUS1	YMR240C	RPL9B	P51401	191 aa	Known RBP	2.94	□□□□□ -1.94
CUS1	YMR240C	SNO1	Q03144	224 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	LPP1	Q04396	274 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	GGA1	Q06336	557 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	ARR2	Q06597	130 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	YNG1	Q08465	219 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	EMC6	Q12431	108 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	MHT1	Q12525	324 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-LR1	P0C2J3	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-F	P0CX63	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-GR2	P0CX64	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-C	P25384	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-DR2	Q03494	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY1B-DR1	Q03855	1755 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-DR3	Q07791	1770 aa	Known RBP	2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-OR1	Q12113	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-DR1	Q12472	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	TY2B-OR2	Q12501	1770 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	SSK2	P53599	1579 aa		2.94	□□□□□ -1.94
CUS1	YMR240C	XRN1	P22147	1528 aa	Known RBP	2.94	□□□□□ -1.94
CUS1	YMR240C	TCA17	P32613	152 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	VMA11	P32842	164 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	SOK1	P40317	901 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	YKE4	P40544	346 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	YLR460C	P54007	376 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	PSF1	Q12488	208 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	TY1B-DR3	Q99231	1755 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	REV3	P14284	1504 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	SIN3	P22579	1536 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	SEC4	P07560	215 aa	Known RBP	2.93	□□□□□ -1.94
CUS1	YMR240C	RPS28B	P0C0X0	67 aa	Known RBP	2.93	□□□□□ -1.94
CUS1	YMR240C	YPR170W-B	P0C5R9	85 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	MEI4	P29467	408 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	NRK1	P53915	240 aa		2.93	□□□□□ -1.94
CUS1	YMR240C	RPS28A	Q3E7X9	67 aa	Predicted RBP	2.93	□□□□□ -1.94
CUS1	YMR240C	MSW1	P04803	379 aa		2.92	□□□□□ -1.94
CUS1	YMR240C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	2.92	□□□□□ -1.94	not detected
CUS1	YMR240C	ATG22	P25568	528 aa		2.92	□□□□□ -1.94
CUS1	YMR240C	SPS18	P32572	300 aa		2.92	□□□□□ -1.94
CUS1	YMR240C	MRPL28	P36527	147 aa		2.92	□□□□□ -1.94
CUS1	YMR240C	POP4	P38336	279 aa		2.92	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 33.8 ms