RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	PHO80	P20052	293 aa		0.69	□□□□□ -2.3
UBP3	YER151C	RPS1B	P23248	255 aa	Known RBP	0.69	□□□□□ -2.3
UBP3	YER151C	PCL1	P24867	279 aa		0.69	□□□□□ -2.3
UBP3	YER151C	TRR1	P29509	319 aa	Known RBP	0.69	□□□□□ -2.3
UBP3	YER151C	OAC1	P32332	324 aa		0.69	□□□□□ -2.3
UBP3	YER151C	NHP2	P32495	156 aa	Predicted RBP	0.69	□□□□□ -2.3
UBP3	YER151C	JEN1	P36035	616 aa		0.69	□□□□□ -2.3
UBP3	YER151C	SIF2	P38262	535 aa		0.69	□□□□□ -2.3
UBP3	YER151C	POP4	P38336	279 aa		0.69	□□□□□ -2.3
UBP3	YER151C	YHR035W	P38769	630 aa		0.69	□□□□□ -2.3
UBP3	YER151C	YAE1	P47118	141 aa	Predicted RBP	0.69	□□□□□ -2.3
UBP3	YER151C	BAT2	P47176	376 aa	Known RBP	0.69	□□□□□ -2.3
UBP3	YER151C	IBD2	P53892	351 aa		0.69	□□□□□ -2.3
UBP3	YER151C	DIA1	P54005	336 aa		0.69	□□□□□ -2.3
UBP3	YER151C	CIK1	Q01649	594 aa		0.69	□□□□□ -2.3
UBP3	YER151C	ODC1	Q03028	310 aa		0.69	□□□□□ -2.3
UBP3	YER151C	GRH1	Q04410	372 aa	Known RBP	0.69	□□□□□ -2.3
UBP3	YER151C	NOC4	Q06512	552 aa	Predicted RBP	0.69	□□□□□ -2.3
UBP3	YER151C	TSR2	Q06672	205 aa	Known RBP	0.69	□□□□□ -2.3
UBP3	YER151C	MDY2	Q12285	212 aa		0.69	□□□□□ -2.3
UBP3	YER151C	PST1	Q12355	444 aa		0.69	□□□□□ -2.3
UBP3	YER151C	SEC16	P48415	2195 aa	Known RBP	0.69	□□□□□ -2.3
UBP3	YER151C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	0.68	□□□□□ -2.3	not detected
UBP3	YER151C	BUD23	P25627	275 aa	Predicted RBP	0.68	□□□□□ -2.3
UBP3	YER151C	YBL059W	P34224	193 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YKL187C	P34231	750 aa		0.68	□□□□□ -2.3
UBP3	YER151C	SHE1	P38200	338 aa		0.68	□□□□□ -2.3
UBP3	YER151C	SNF11	P38956	169 aa		0.68	□□□□□ -2.3
UBP3	YER151C	COX15	P40086	486 aa		0.68	□□□□□ -2.3
UBP3	YER151C	CDC40	P40968	455 aa	Predicted RBP	0.68	□□□□□ -2.3
UBP3	YER151C	YJR085C	P47131	105 aa	Known RBP	0.68	□□□□□ -2.3
UBP3	YER151C	YGR149W	P48236	432 aa		0.68	□□□□□ -2.3
UBP3	YER151C	TWF1	P53250	332 aa		0.68	□□□□□ -2.3
UBP3	YER151C	GTR2	P53290	341 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YLR194C	Q05777	254 aa		0.68	□□□□□ -2.3
UBP3	YER151C	COA4	Q05809	96 aa		0.68	□□□□□ -2.3
UBP3	YER151C	GAT3	Q07928	141 aa		0.68	□□□□□ -2.3
UBP3	YER151C	UIP4	Q08926	304 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YOR289W	Q12012	251 aa	Predicted RBP	0.68	□□□□□ -2.3
UBP3	YER151C	RPN6	Q12377	434 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YOR343C	Q12484	108 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YLR255C	O13574	117 aa		0.68	□□□□□ -2.3
UBP3	YER151C	TIM9	O74700	87 aa		0.68	□□□□□ -2.3
UBP3	YER151C	GCN4	P03069	281 aa		0.68	□□□□□ -2.3
UBP3	YER151C	STF2	P16965	84 aa		0.68	□□□□□ -2.3
UBP3	YER151C	SPO12	P17123	173 aa		0.68	□□□□□ -2.3
UBP3	YER151C	PRE7	P23724	241 aa	Known RBP	0.68	□□□□□ -2.3
UBP3	YER151C	RPL16B	P26785	198 aa	Known RBP	0.68	□□□□□ -2.3
UBP3	YER151C	TIP1	P27654	210 aa	Predicted RBP	0.68	□□□□□ -2.3
UBP3	YER151C	VMA11	P32842	164 aa		0.68	□□□□□ -2.3
UBP3	YER151C	MCH2	P36032	473 aa		0.68	□□□□□ -2.3
UBP3	YER151C	CMC1	P36064	111 aa		0.68	□□□□□ -2.3
UBP3	YER151C	MSS2	P40990	351 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YGR210C	P42942	411 aa		0.68	□□□□□ -2.3
UBP3	YER151C	DAN1	P47178	298 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YGL204C	P53089	101 aa		0.68	□□□□□ -2.3
UBP3	YER151C	ACT1	P60010	375 aa	Known RBP	0.68	□□□□□ -2.3
UBP3	YER151C	SHH4	Q06236	168 aa		0.68	□□□□□ -2.3
UBP3	YER151C	SUE1	Q06524	206 aa		0.68	□□□□□ -2.3
UBP3	YER151C	GPN3	Q06543	272 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YPL199C	Q08954	240 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YPR145C-A	Q2V2P0	78 aa		0.68	□□□□□ -2.3
UBP3	YER151C	YGL041C-B	Q3E750	60 aa		0.68	□□□□□ -2.3
UBP3	YER151C	VPS63	O13549	108 aa		0.67	□□□□□ -2.3
UBP3	YER151C	RTC6	O14464	93 aa		0.67	□□□□□ -2.3
UBP3	YER151C	SIR2	P06700	562 aa		0.67	□□□□□ -2.3
UBP3	YER151C	DST1	P07273	309 aa		0.67	□□□□□ -2.3
UBP3	YER151C	RPL35A	P0CX84	120 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	RPL35B	P0CX85	120 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	TRX1	P22217	103 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	VMA6	P32366	345 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	FZF1	P32805	299 aa		0.67	□□□□□ -2.3
UBP3	YER151C	RIB5	P38145	238 aa		0.67	□□□□□ -2.3
UBP3	YER151C	YHR138C	P38841	114 aa	Predicted RBP	0.67	□□□□□ -2.3
UBP3	YER151C	EGD2	P38879	174 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	LSM5	P40089	93 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	EMC5	P40540	141 aa		0.67	□□□□□ -2.3
UBP3	YER151C	HXT14	P42833	540 aa		0.67	□□□□□ -2.3
UBP3	YER151C	YGR201C	P42936	225 aa		0.67	□□□□□ -2.3
UBP3	YER151C	MRX5	P47007	382 aa		0.67	□□□□□ -2.3
UBP3	YER151C	YIF1	P53845	314 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	FMN1	Q03778	218 aa		0.67	□□□□□ -2.3
UBP3	YER151C	SOV1	Q04748	898 aa		0.67	□□□□□ -2.3
UBP3	YER151C	RQC1	Q05468	723 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	RIF2	Q06208	395 aa		0.67	□□□□□ -2.3
UBP3	YER151C	YET3	Q07451	203 aa		0.67	□□□□□ -2.3
UBP3	YER151C	RTR2	Q12378	196 aa		0.67	□□□□□ -2.3
UBP3	YER151C	VAR1	P02381	398 aa		0.67	□□□□□ -2.3
UBP3	YER151C	DDR48	P18899	430 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	SPO13	P23624	291 aa		0.67	□□□□□ -2.3
UBP3	YER151C	ERV1	P27882	189 aa		0.67	□□□□□ -2.3
UBP3	YER151C	DOA4	P32571	926 aa		0.67	□□□□□ -2.3
UBP3	YER151C	SUA5	P32579	426 aa		0.67	□□□□□ -2.3
UBP3	YER151C	RAD23	P32628	398 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	OLA1	P38219	394 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	SSH1	P38353	490 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	BIG1	P38813	335 aa		0.67	□□□□□ -2.3
UBP3	YER151C	RIO2	P40160	425 aa	Known RBP	0.67	□□□□□ -2.3
UBP3	YER151C	YNL190W	P53872	204 aa		0.67	□□□□□ -2.3
UBP3	YER151C	YNL095C	P53932	642 aa		0.67	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 55.8 ms