RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP40	YKL012W	JLP1	Q12358	412 aa		4.24	□□□□□ -1.73
PRP40	YKL012W	YAK1	P14680	807 aa		4.23	□□□□□ -1.73
PRP40	YKL012W	PRX1	P34227	261 aa	Known RBP	4.23	□□□□□ -1.73
PRP40	YKL012W	TRM7	P38238	310 aa	Known RBP	4.23	□□□□□ -1.73
PRP40	YKL012W	NIF3	P53081	288 aa		4.23	□□□□□ -1.73
PRP40	YKL012W	YNL046W	P53956	172 aa		4.23	□□□□□ -1.73
PRP40	YKL012W	HEM25	Q07534	307 aa		4.23	□□□□□ -1.73
PRP40	YKL012W	SMT3	Q12306	101 aa	Known RBP	4.23	□□□□□ -1.73
PRP40	YKL012W	SOD1	P00445	154 aa	Known RBP	4.22	□□□□□ -1.73
PRP40	YKL012W	RPL28	P02406	149 aa	Known RBP	4.22	□□□□□ -1.73
PRP40	YKL012W	ASF2	P32448	525 aa	Predicted RBP	4.22	□□□□□ -1.73
PRP40	YKL012W	MID2	P36027	376 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	ADO1	P47143	340 aa	Known RBP	4.22	□□□□□ -1.73
PRP40	YKL012W	FLC3	P53121	802 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	RSM27	P53305	110 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	TPO4	Q12256	659 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	YRF1-2	P40105	1681 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	CBF1	P17106	351 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	ERD2	P18414	219 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
PRP40	YKL012W	SUR2	P38992	349 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	YRB2	P40517	327 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	YJL028W	P47062	111 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	NUP57	P48837	541 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	FYV6	P53913	173 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	TIM22	Q12328	207 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	SIR4	P11978	1358 aa		4.22	□□□□□ -1.73
PRP40	YKL012W	URB1	P34241	1764 aa	Known RBP	4.22	□□□□□ -1.73
PRP40	YKL012W	HTB1	P02293	131 aa	Known RBP	4.21	□□□□□ -1.74
PRP40	YKL012W	HTB2	P02294	131 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	SPL2	P38839	148 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	TEM1	P38987	245 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	TOS8	P53147	276 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	HST4	P53688	370 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	ECM11	Q04110	302 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	EMI1	Q04406	187 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	YOL019W	Q08157	551 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	YPR011C	Q12251	326 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	YPL229W	Q99395	206 aa		4.21	□□□□□ -1.74
PRP40	YKL012W	YOL163W	P0CF20	169 aa		4.2	□□□□□ -1.74
PRP40	YKL012W	PPH21	P23594	369 aa		4.2	□□□□□ -1.74
PRP40	YKL012W	BMH1	P29311	267 aa	Known RBP	4.2	□□□□□ -1.74
PRP40	YKL012W	SSH1	P38353	490 aa	Known RBP	4.2	□□□□□ -1.74
PRP40	YKL012W	IKI1	P38874	309 aa		4.2	□□□□□ -1.74
PRP40	YKL012W	OST3	P48439	350 aa		4.2	□□□□□ -1.74
PRP40	YKL012W	PRR2	Q12310	699 aa		4.2	□□□□□ -1.74
PRP40	YKL012W	IES3	Q12345	250 aa		4.2	□□□□□ -1.74
PRP40	YKL012W	ISD11	Q6Q560	94 aa		4.2	□□□□□ -1.74
PRP40	YKL012W	ADE6	P38972	1358 aa	Known RBP	4.2	□□□□□ -1.74
PRP40	YKL012W	YEL009C-A	A0A023PZF2	135 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	RFA3	P26755	122 aa	Known RBP	4.19	□□□□□ -1.74
PRP40	YKL012W	ECM13	P38195	257 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	YFR045W	P43617	309 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	BRR6	P53062	197 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	ABP140	Q08641	628 aa	Known RBP	4.19	□□□□□ -1.74
PRP40	YKL012W	FKS3	Q04952	1785 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	RPL27A	P0C2H6	136 aa	Known RBP	4.19	□□□□□ -1.74
PRP40	YKL012W	RPL27B	P0C2H7	136 aa	Known RBP	4.19	□□□□□ -1.74
PRP40	YKL012W	URA6	P15700	204 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	YPR172W	Q06608	200 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	YCL012C	Q8J0M4	134 aa		4.19	□□□□□ -1.74
PRP40	YKL012W	DUR1,2	P32528	1835 aa	Known RBP	4.19	□□□□□ -1.74
PRP40	YKL012W	SFC1	P33303	322 aa		4.18	□□□□□ -1.74
PRP40	YKL012W	YPL247C	Q12523	523 aa		4.18	□□□□□ -1.74
PRP40	YKL012W	RPO41	P13433	1351 aa	Known RBP	4.18	□□□□□ -1.74
PRP40	YKL012W	APA2	P22108	325 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	SRY1	P36007	326 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	IRC18	P47056	224 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
PRP40	YKL012W	YDR222W	Q04925	415 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	MSA1	Q08471	629 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	SWI1	P09547	1314 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	SLX1	P38324	304 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	YER189W	P40104	122 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	GET1	P53192	235 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	SLD7	Q08457	257 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	EMP46	Q12396	444 aa		4.17	□□□□□ -1.74
PRP40	YKL012W	RPS24A	P0CX31	135 aa	Known RBP	4.16	□□□□□ -1.74
PRP40	YKL012W	RPS24B	P0CX32	135 aa	Known RBP	4.16	□□□□□ -1.74
PRP40	YKL012W	TOM40	P23644	387 aa	Known RBP	4.16	□□□□□ -1.74
PRP40	YKL012W	NOP19	P53317	196 aa	Predicted RBP	4.16	□□□□□ -1.74
PRP40	YKL012W	PST1	Q12355	444 aa		4.16	□□□□□ -1.74
PRP40	YKL012W	TUS1	Q06412	1307 aa		4.15	□□□□□ -1.74
PRP40	YKL012W	ZWF1	P11412	505 aa	Known RBP	4.15	□□□□□ -1.74
PRP40	YKL012W	ALG9	P53868	555 aa	Known RBP	4.15	□□□□□ -1.74
PRP40	YKL012W	MRX4	Q12467	430 aa		4.15	□□□□□ -1.74
PRP40	YKL012W	QCR7	P00128	127 aa		4.14	□□□□□ -1.75
PRP40	YKL012W	COX5A	P00424	153 aa		4.14	□□□□□ -1.75
PRP40	YKL012W	PEX17	P40155	199 aa		4.14	□□□□□ -1.75
PRP40	YKL012W	MDM34	P53083	459 aa		4.14	□□□□□ -1.75
PRP40	YKL012W	ADE1	P27616	306 aa		4.14	□□□□□ -1.75
PRP40	YKL012W	RNP1	P32385	249 aa		4.14	□□□□□ -1.75
PRP40	YKL012W	MIG2	P53035	382 aa		4.14	□□□□□ -1.75
PRP40	YKL012W	SYF2	P53277	215 aa	Predicted RBP	4.14	□□□□□ -1.75
PRP40	YKL012W	YLR179C	Q06252	201 aa	Known RBP	4.14	□□□□□ -1.75
PRP40	YKL012W	NOT5	Q12514	560 aa	Predicted RBP	4.14	□□□□□ -1.75
PRP40	YKL012W	SEC22	P22214	214 aa		4.13	□□□□□ -1.75
PRP40	YKL012W	BMT5	P40493	336 aa		4.13	□□□□□ -1.75
PRP40	YKL012W	ECO1	P43605	281 aa		4.13	□□□□□ -1.75
PRP40	YKL012W	ILM1	P47155	203 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 29 ms