RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	YLR352W	Q06479	807 aa		4.06	□□□□□ -1.76
EAR1	YMR171C	YPR091C	Q06833	770 aa		4.06	□□□□□ -1.76
EAR1	YMR171C	EAF3	Q12432	401 aa		4.06	□□□□□ -1.76
EAR1	YMR171C	PCC1	Q3E833	88 aa		4.06	□□□□□ -1.76
EAR1	YMR171C	CCH1	P50077	2039 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	AIM17	P23180	465 aa	Known RBP	4.05	□□□□□ -1.76
EAR1	YMR171C	IMG1	P25626	169 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	YBR144C	P34215	104 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	SPT10	P35208	640 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	PAN3	P36102	679 aa	Predicted RBP	4.05	□□□□□ -1.76
EAR1	YMR171C	SDS24	P38314	527 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	IKI1	P38874	309 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	PRP39	P39682	629 aa	Known RBP	4.05	□□□□□ -1.76
EAR1	YMR171C	YEL057C	P39983	233 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	YIL060W	P40519	144 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	CIN2	P46670	268 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	CCC1	P47818	322 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	YPL113C	Q02961	396 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	ODC1	Q03028	310 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	YML096W	Q04489	525 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	DCS1	Q06151	350 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	YPR172W	Q06608	200 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	POS5	Q06892	414 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	YOR365C	Q08844	703 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	MMT2	Q08970	484 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	FCF2	Q12035	217 aa	Predicted RBP	4.05	□□□□□ -1.76
EAR1	YMR171C	VMA9	Q3E7B6	73 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	TOR1	P35169	2470 aa		4.05	□□□□□ -1.76
EAR1	YMR171C	YPT1	P01123	206 aa	Known RBP	4.04	□□□□□ -1.76
EAR1	YMR171C	ARO3	P14843	370 aa	Known RBP	4.04	□□□□□ -1.76
EAR1	YMR171C	YPK2	P18961	677 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	GPI12	P23797	304 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
EAR1	YMR171C	EMP24	P32803	203 aa	Known RBP	4.04	□□□□□ -1.76
EAR1	YMR171C	VAM7	P32912	316 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	GPX1	P36014	167 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	VPS52	P39904	641 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	PGD1	P40356	397 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	AVT7	P40501	490 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	PHB1	P40961	287 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	YJR111C	P47148	283 aa	Known RBP	4.04	□□□□□ -1.76
EAR1	YMR171C	YGR066C	P53242	292 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	MTM1	P53320	366 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	RHO3	Q00245	231 aa	Known RBP	4.04	□□□□□ -1.76
EAR1	YMR171C	ATX2	Q12067	313 aa		4.04	□□□□□ -1.76
EAR1	YMR171C	UBI4	P0CG63	381 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	RPL40A	P0CH08	128 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	RPL40B	P0CH09	128 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	RPB8	P20436	146 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	IFM1	P25038	676 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	SEF1	P34228	1148 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	YPT53	P36019	220 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	YPC1	P38298	316 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	POG1	P40473	351 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	OTU1	P43558	301 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	COQ5	P49017	307 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	TDA7	P53882	636 aa	Predicted RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	ACT1	P60010	375 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	RSM23	Q01163	450 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	PEX25	Q02969	394 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	INP1	Q03694	420 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	SMA2	Q04658	369 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	MRX8	Q05473	314 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	MRPL51	Q06090	140 aa	Predicted RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	TFC7	Q12415	435 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	NUM1	Q00402	2748 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
EAR1	YMR171C	GAL7	P08431	366 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	CUP1-1	P0CX80	61 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	CUP1-2	P0CX81	61 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	NAM2	P11325	894 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	URA6	P15700	204 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	CKA1	P15790	372 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	SEC22	P22214	214 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	PBN1	P25580	416 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	YKL162C	P36052	402 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	MRPL27	P36526	146 aa	Predicted RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	ICS2	P38284	255 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	SHG1	P38337	142 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	PRS3	P38689	320 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	MNL1	P38888	796 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	YAL037W	P39728	267 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	GTT1	P40582	234 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	IDP2	P41939	412 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	ZIM17	P42844	174 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	MRX5	P47007	382 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	GPI14	P47088	403 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	PKP2	P53170	491 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	PNC1	P53184	216 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	YGR026W	P53217	278 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	SCW4	P53334	386 aa	Known RBP	4.03	□□□□□ -1.76
EAR1	YMR171C	IZH1	Q03419	316 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	SNX41	Q04053	625 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	YDL218W	Q07629	317 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	ORT1	Q12375	292 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	NAG1	Q8TGN9	163 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	ODC2	Q99297	307 aa		4.03	□□□□□ -1.76
EAR1	YMR171C	RPL42A	P0CX27	106 aa	Known RBP	4.02	□□□□□ -1.77
EAR1	YMR171C	RPL42B	P0CX28	106 aa	Known RBP	4.02	□□□□□ -1.77
EAR1	YMR171C	MATALPHA1	P0CY06	175 aa		4.02	□□□□□ -1.77

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