RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CBF1	YJR060W	RMD9	P53140	646 aa	Known RBP	4.58	□□□□□ -1.68
CBF1	YJR060W	SAM50	P53969	484 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	MRP51	Q02950	344 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	PRP3	Q03338	469 aa	Predicted RBP	4.58	□□□□□ -1.68
CBF1	YJR060W	YMR130W	Q04223	302 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	NNT1	Q05874	261 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	ORM2	Q06144	216 aa		4.58	□□□□□ -1.68
CBF1	YJR060W	THP3	Q12049	470 aa	Known RBP	4.58	□□□□□ -1.68
CBF1	YJR060W	RPS16A	P0CX51	143 aa	Known RBP	4.57	□□□□□ -1.68
CBF1	YJR060W	RPS16B	P0CX52	143 aa	Known RBP	4.57	□□□□□ -1.68
CBF1	YJR060W	STE18	P18852	110 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	MEK1	P24719	497 aa	Predicted RBP	4.57	□□□□□ -1.68
CBF1	YJR060W	SPT10	P35208	640 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	YBR063C	P38083	404 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	SHE1	P38200	338 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	MTC6	P38849	526 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	YER084W	P40057	128 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	CCC1	P47818	322 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	PAU12	P53343	120 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	AIM36	Q03798	255 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	GRX3	Q03835	250 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	GAL83	Q04739	417 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	RKM1	Q08961	583 aa	Predicted RBP	4.57	□□□□□ -1.68
CBF1	YJR060W	AEP3	Q12089	606 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	RBD2	Q12270	262 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	BPH1	P25356	2167 aa		4.57	□□□□□ -1.68
CBF1	YJR060W	QCR7	P00128	127 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	COX9	P07255	59 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	RPS23A	P0CX29	145 aa	Known RBP	4.56	□□□□□ -1.68
CBF1	YJR060W	RPS23B	P0CX30	145 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	MRP1	P10662	321 aa	Known RBP	4.56	□□□□□ -1.68
CBF1	YJR060W	ARO3	P14843	370 aa	Known RBP	4.56	□□□□□ -1.68
CBF1	YJR060W	RPS5	P26783	225 aa	Known RBP	4.56	□□□□□ -1.68
CBF1	YJR060W	VPS17	P32913	551 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	YKR015C	P36111	568 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	YBR220C	P38318	560 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	AVT6	P40074	448 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	FMC1	P40491	155 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	YIL060W	P40519	144 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	LOH1	P47055	219 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	ATP23	P53722	227 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	MDM36	Q06820	579 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	MCT1	Q12283	360 aa		4.56	□□□□□ -1.68
CBF1	YJR060W	DSF1	P0CX08	502 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	YNR073C	P0CX09	502 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	PRE7	P23724	241 aa	Known RBP	4.55	□□□□□ -1.68
CBF1	YJR060W	AHC2	P25649	128 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	CLB6	P32943	380 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	MRPS5	P33759	307 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	CLG1	P35190	452 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	DAD2	P36162	133 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	FMP23	P38231	175 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	WSS1	P38838	269 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	RTT105	P40063	208 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	YFL051C	P43552	160 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	RPS0B	P46654	252 aa	Known RBP	4.55	□□□□□ -1.68
CBF1	YJR060W	MTM1	P53320	366 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	SAY1	P53324	424 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	SMM1	P53720	384 aa	Known RBP	4.55	□□□□□ -1.68
CBF1	YJR060W	RRP17	Q04031	235 aa	Predicted RBP	4.55	□□□□□ -1.68
CBF1	YJR060W	YDR391C	Q04170	232 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	FIT3	Q08907	204 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	NCE102	Q12207	173 aa	RIP-Chip data	4.55	□□□□□ -1.68	not detected
CBF1	YJR060W	VAM3	Q12241	283 aa		4.55	□□□□□ -1.68
CBF1	YJR060W	RPL6B	P05739	176 aa	Known RBP	4.54	□□□□□ -1.68
CBF1	YJR060W	PDE2	P06776	526 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	TAL1	P15019	335 aa	Known RBP	4.54	□□□□□ -1.68
CBF1	YJR060W	DOA4	P32571	926 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	ANR2	P36090	516 aa	Predicted RBP	4.54	□□□□□ -1.68
CBF1	YJR060W	FRM2	P37261	193 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	PAU24	P38155	120 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	TCM62	P38228	572 aa	Known RBP	4.54	□□□□□ -1.68
CBF1	YJR060W	EFM3	P47163	339 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	AAH1	P53909	347 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	NRK1	P53915	240 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	ASI3	P53983	676 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	YLR152C	P54072	576 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	MAK3	Q03503	176 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	DCS1	Q06151	350 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	PML1	Q07930	204 aa	Predicted RBP	4.54	□□□□□ -1.68
CBF1	YJR060W	YPR1	Q12458	312 aa		4.54	□□□□□ -1.68
CBF1	YJR060W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
CBF1	YJR060W	MES1	P00958	751 aa	Known RBP	4.53	□□□□□ -1.68
CBF1	YJR060W	REP1	P03871	373 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	SPS100	P13130	326 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	FUN26	P31381	517 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	PEX32	P38292	413 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	DLS1	P40366	167 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	GDS1	P41913	522 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	YJL016W	P47072	561 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	YAE1	P47118	141 aa	Predicted RBP	4.53	□□□□□ -1.68
CBF1	YJR060W	UBC13	P52490	153 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	PMT5	P52867	743 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	PXR1	P53335	271 aa	Predicted RBP	4.53	□□□□□ -1.68
CBF1	YJR060W	YNR048W	P53740	393 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	USB1	Q12208	290 aa	Known RBP	4.53	□□□□□ -1.68
CBF1	YJR060W	SPO24	Q3E752	67 aa		4.53	□□□□□ -1.68
CBF1	YJR060W	SIR2	P06700	562 aa		4.52	□□□□□ -1.69
CBF1	YJR060W	MRPS28	P21771	286 aa		4.52	□□□□□ -1.69
CBF1	YJR060W	COQ3	P27680	312 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 24.7 ms