RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeastyeast

Gene CUP9, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUP9YPL177C SWI1P09547 1314 aa2.07□□□□□ -2.08
CUP9YPL177C RAD3P06839 778 aa2.06□□□□□ -2.08
CUP9YPL177C PRS4P38063 326 aaPredicted RBP2.06□□□□□ -2.08
CUP9YPL177C ASI3P53983 676 aa2.06□□□□□ -2.08
CUP9YPL177C LAP3Q01532 483 aaKnown RBP RIP-Chip data2.06□□□□□ -2.08not detected
CUP9YPL177C COQ10Q08058 207 aa2.06□□□□□ -2.08
CUP9YPL177C SEC22P22214 214 aa2.05□□□□□ -2.08
CUP9YPL177C HOM6P31116 359 aaKnown RBP2.05□□□□□ -2.08
CUP9YPL177C DRE2P36152 348 aa2.05□□□□□ -2.08
CUP9YPL177C MRX3P38172 270 aa2.05□□□□□ -2.08
CUP9YPL177C PEX12Q04370 399 aa2.05□□□□□ -2.08
CUP9YPL177C ATG17Q06410 417 aa2.05□□□□□ -2.08
CUP9YPL177C TY3A-GQ12173 290 aa2.05□□□□□ -2.08
CUP9YPL177C TY3A-IQ99219 290 aa2.05□□□□□ -2.08
CUP9YPL177C SGA1P08019 549 aa2.04□□□□□ -2.08
CUP9YPL177C YKR104WP0CE69 306 aa2.04□□□□□ -2.08
CUP9YPL177C SSH1P38353 490 aaKnown RBP2.04□□□□□ -2.08
CUP9YPL177C YGP1P38616 354 aaKnown RBP2.04□□□□□ -2.08
CUP9YPL177C TIF34P40217 347 aaKnown RBP2.04□□□□□ -2.08
CUP9YPL177C BNA6P43619 295 aa2.04□□□□□ -2.08
CUP9YPL177C DAN1P47178 298 aa2.04□□□□□ -2.08
CUP9YPL177C COS6P53344 381 aa2.04□□□□□ -2.08
CUP9YPL177C SNZ2P53824 298 aa2.04□□□□□ -2.08
CUP9YPL177C YNL134CP53912 376 aaKnown RBP2.04□□□□□ -2.08
CUP9YPL177C CGI121Q03705 181 aaKnown RBP2.04□□□□□ -2.08
CUP9YPL177C YPR098CQ06089 161 aa2.04□□□□□ -2.08
CUP9YPL177C EMP46Q12396 444 aa2.04□□□□□ -2.08
CUP9YPL177C SAS5Q99314 248 aa2.04□□□□□ -2.08
CUP9YPL177C RCN1P36054 211 aa2.03□□□□□ -2.08
CUP9YPL177C GOS1P38736 223 aa2.03□□□□□ -2.08
CUP9YPL177C OST2P46964 130 aa2.03□□□□□ -2.08
CUP9YPL177C USE1P53146 245 aa2.03□□□□□ -2.08
CUP9YPL177C MRH4P53166 561 aa2.03□□□□□ -2.08
CUP9YPL177C SPG4Q04438 115 aa2.03□□□□□ -2.08
CUP9YPL177C YDR124WQ04608 324 aa2.03□□□□□ -2.08
CUP9YPL177C MSH5Q12175 901 aa2.03□□□□□ -2.08
CUP9YPL177C BBP1Q12365 385 aa2.03□□□□□ -2.08
CUP9YPL177C TCP1P12612 559 aaKnown RBP2.02□□□□□ -2.09
CUP9YPL177C RNA15P25299 296 aaPredicted RBP2.02□□□□□ -2.09
CUP9YPL177C SGE1P33335 543 aa2.02□□□□□ -2.09
CUP9YPL177C YHL026CP38740 315 aa2.02□□□□□ -2.09
CUP9YPL177C MRPL49P40858 161 aaPredicted RBP2.02□□□□□ -2.09
CUP9YPL177C GOT1Q03554 138 aa2.02□□□□□ -2.09
CUP9YPL177C YLR173WQ06247 608 aa2.02□□□□□ -2.09
CUP9YPL177C RRP40Q08285 240 aaKnown RBP2.02□□□□□ -2.09
CUP9YPL177C RRS1Q08746 203 aaKnown RBP2.02□□□□□ -2.09
CUP9YPL177C MSA2P36157 363 aa2.01□□□□□ -2.09
CUP9YPL177C JHD2P47156 728 aaPredicted RBP2.01□□□□□ -2.09
CUP9YPL177C SYC1Q08553 188 aaPredicted RBP2.01□□□□□ -2.09
CUP9YPL177C SCO1P23833 295 aa2□□□□□ -2.09
CUP9YPL177C YCR102CP25608 368 aa2□□□□□ -2.09
CUP9YPL177C MRPL39P36533 70 aa2□□□□□ -2.09
CUP9YPL177C YHB1P39676 399 aaKnown RBP2□□□□□ -2.09
CUP9YPL177C THO1P40040 218 aaKnown RBP2□□□□□ -2.09
CUP9YPL177C YER189WP40104 122 aa2□□□□□ -2.09
CUP9YPL177C RHO3Q00245 231 aaKnown RBP2□□□□□ -2.09
CUP9YPL177C YOR186WQ08560 144 aa2□□□□□ -2.09
CUP9YPL177C YOR283WQ12040 230 aaKnown RBP2□□□□□ -2.09
CUP9YPL177C YCT1Q12235 531 aa2□□□□□ -2.09
CUP9YPL177C ATG31Q12421 196 aa2□□□□□ -2.09
CUP9YPL177C YHR032W-AP0C5N6 59 aa1.99□□□□□ -2.09
CUP9YPL177C GRE3P38715 327 aaKnown RBP RIP-Chip data1.99□□□□□ -2.09not detected
CUP9YPL177C BFR1P38934 470 aaKnown RBP RIP-Chip data1.99□□□□□ -2.09not detected
CUP9YPL177C SNX4P47057 423 aa1.99□□□□□ -2.09
CUP9YPL177C YJL027CP47063 138 aaPredicted RBP1.99□□□□□ -2.09
CUP9YPL177C CSM4Q08955 156 aa1.99□□□□□ -2.09
CUP9YPL177C EMC6Q12431 108 aa1.99□□□□□ -2.09
CUP9YPL177C YHR086W-AQ3E746 53 aa1.99□□□□□ -2.09
CUP9YPL177C YLR462WO13556 202 aa1.98□□□□□ -2.09
CUP9YPL177C SCM4P32564 187 aa1.98□□□□□ -2.09
CUP9YPL177C YOR062CP36025 268 aa1.98□□□□□ -2.09
CUP9YPL177C FZO1P38297 855 aa1.98□□□□□ -2.09
CUP9YPL177C COS8P38723 381 aa1.98□□□□□ -2.09
CUP9YPL177C YEL075CP39972 122 aa1.98□□□□□ -2.09
CUP9YPL177C SMD3P43321 101 aaKnown RBP1.98□□□□□ -2.09
CUP9YPL177C YJR079WP47126 109 aa1.98□□□□□ -2.09
CUP9YPL177C YGL159WP53110 370 aa1.98□□□□□ -2.09
CUP9YPL177C PAM18Q07914 168 aa1.98□□□□□ -2.09
CUP9YPL177C YLR030WQ07967 263 aa1.98□□□□□ -2.09
CUP9YPL177C SNU23Q12368 194 aaPredicted RBP1.98□□□□□ -2.09
CUP9YPL177C CCA1P21269 546 aa1.97□□□□□ -2.09
CUP9YPL177C ERG24P32462 438 aaKnown RBP1.97□□□□□ -2.09
CUP9YPL177C NRG2P38082 220 aa1.97□□□□□ -2.09
CUP9YPL177C YHR125WP38831 101 aa1.97□□□□□ -2.09
CUP9YPL177C YHR127WP38833 243 aaKnown RBP1.97□□□□□ -2.09
CUP9YPL177C FCY21P40039 528 aa1.97□□□□□ -2.09
CUP9YPL177C HOC1P47124 396 aa1.97□□□□□ -2.09
CUP9YPL177C YNL046WP53956 172 aa1.97□□□□□ -2.09
CUP9YPL177C RRN5Q02983 363 aa1.97□□□□□ -2.09
CUP9YPL177C DCR2Q05924 578 aa1.97□□□□□ -2.09
CUP9YPL177C Q0255P03881 472 aa1.96□□□□□ -2.1
CUP9YPL177C ARC15P40518 154 aaRIP-Chip data1.96□□□□□ -2.1not detected
CUP9YPL177C MSA1Q08471 629 aa1.96□□□□□ -2.1
CUP9YPL177C MHT1Q12525 324 aa1.96□□□□□ -2.1
CUP9YPL177C DOA4P32571 926 aa1.95□□□□□ -2.1
CUP9YPL177C MRPL50P53724 139 aa1.95□□□□□ -2.1
CUP9YPL177C FAR8Q05040 523 aa1.95□□□□□ -2.1
CUP9YPL177C YPR172WQ06608 200 aa1.95□□□□□ -2.1
CUP9YPL177C YLR126CQ12288 251 aa1.95□□□□□ -2.1
CUP9YPL177C MED4Q12343 284 aa1.95□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 20 ms