RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	AEP1	P32493	518 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	UGX2	P32772	223 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	COX13	P32799	129 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	NTF2	P33331	125 aa	Known RBP	4.05	□□□□□ -1.76
KIN28	YDL108W	YKR041W	P36134	250 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	ROT2	P38138	954 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	YHR127W	P38833	243 aa	Known RBP	4.05	□□□□□ -1.76
KIN28	YDL108W	LYS1	P38998	373 aa	RIP-Chip data	4.05	□□□□□ -1.76	not detected
KIN28	YDL108W	AZF1	P41696	914 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	SER2	P42941	309 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	LSM8	P47093	109 aa	Known RBP	4.05	□□□□□ -1.76
KIN28	YDL108W	BIR1	P47134	954 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	SOL1	P50278	321 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	MAL13	P53338	473 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	TIM8	P57744	87 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	APS2	Q00381	147 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	YDR387C	Q04162	555 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	YTH1	Q06102	208 aa	Predicted RBP	4.05	□□□□□ -1.76
KIN28	YDL108W	ATG39	Q06159	398 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	YOL024W	Q08172	172 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	HRT3	Q12347	344 aa		4.05	□□□□□ -1.76
KIN28	YDL108W	CDC7	P06243	507 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	PHO2	P07269	559 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	YGL041W-A	P0C5N3	154 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	YOL163W	P0CF20	169 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	PBI2	P0CT04	75 aa	Known RBP	4.04	□□□□□ -1.76
KIN28	YDL108W	RPS2	P25443	254 aa	Known RBP	4.04	□□□□□ -1.76
KIN28	YDL108W	PEX34	P25584	144 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	FUN19	P28003	413 aa	Predicted RBP	4.04	□□□□□ -1.76
KIN28	YDL108W	HYM1	P32464	399 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	PDC2	P32896	925 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	SLM6	P38343	150 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	YCH1	P42937	148 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	FAR7	P43592	221 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	YAE1	P47118	141 aa	Predicted RBP	4.04	□□□□□ -1.76
KIN28	YDL108W	TIS11	P47977	285 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	PDR17	P53844	350 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	SEI1	Q06058	285 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	YAP7	Q08182	245 aa		4.04	□□□□□ -1.76
KIN28	YDL108W	PSK1	P31374	1356 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	RPL31A	P0C2H8	113 aa	Known RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	OAC1	P32332	324 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	APE2	P32454	952 aa	Known RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	YKL187C	P34231	750 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	MRPL15	P36523	253 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	MRPL28	P36527	147 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	YBR056W	P38081	501 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	ECM33	P38248	429 aa	Known RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	ARC40	P38328	384 aa	Known RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	YHR035W	P38769	630 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	NDT80	P38830	627 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	SPL2	P38839	148 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	CHL4	P38907	458 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	YIL152W	P40455	235 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	GLC8	P41818	229 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	RPE1	P46969	238 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	OST3	P48439	350 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	PYK2	P52489	506 aa	Known RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	SWC4	P53201	476 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	LST7	P53237	242 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	SMM1	P53720	384 aa	Known RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	CDC14	Q00684	551 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	NUP100	Q02629	959 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	ELP3	Q02908	557 aa	Known RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	MRX11	Q03079	207 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	YMR010W	Q03687	405 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	YDR415C	Q04033	374 aa	Predicted RBP	4.03	□□□□□ -1.76
KIN28	YDL108W	YMR317W	Q04893	1140 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	SFH1	Q06168	426 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	YLR126C	Q12288	251 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	BI3	Q9ZZW7	517 aa		4.03	□□□□□ -1.76
KIN28	YDL108W	TY1B-H	O13535	1793 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	COX5A	P00424	153 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	BCY1	P07278	416 aa	Known RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	TYR1	P20049	452 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	RPL16B	P26785	198 aa	Known RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	SNC1	P31109	117 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	MKK1	P32490	508 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	UTR4	P32626	227 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	SFC1	P33303	322 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	MTR2	P34232	184 aa	Known RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	MRPL3	P36516	390 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	IST2	P38250	946 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	YBR220C	P38318	560 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	FAA2	P39518	744 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	LSM4	P40070	187 aa	Known RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	HAC1	P41546	238 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	GLR1	P41921	483 aa	Known RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	MEP2	P41948	499 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	IKS1	P47042	667 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	RPS12	P48589	143 aa	Known RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	MST27	P53176	234 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	TIM13	P53299	105 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	UTP15	Q04305	513 aa	Known RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	YMR254C	Q04838	102 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	YPR098C	Q06089	161 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	SNT309	Q06091	175 aa	Predicted RBP	4.02	□□□□□ -1.77
KIN28	YDL108W	ERV2	Q12284	196 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	ATG34	Q12292	412 aa		4.02	□□□□□ -1.77
KIN28	YDL108W	YPL119C-A	Q3E751	87 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 119.2 ms