RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C PCL6P40038 420 aa2.3□□□□□ -2.04
DNL4YOR005C AYR1P40471 297 aa2.3□□□□□ -2.04
DNL4YOR005C SNO3P43544 222 aa2.3□□□□□ -2.04
DNL4YOR005C KEG1P43614 200 aa2.3□□□□□ -2.04
DNL4YOR005C ASG7P46993 209 aa2.3□□□□□ -2.04
DNL4YOR005C SFH5P47008 294 aa2.3□□□□□ -2.04
DNL4YOR005C IRC18P47056 224 aa2.3□□□□□ -2.04
DNL4YOR005C AIM24P47127 394 aa2.3□□□□□ -2.04
DNL4YOR005C SEH1P53011 349 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C YGL039WP53183 348 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C EFM5P53200 248 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C NUP49Q02199 472 aa2.3□□□□□ -2.04
DNL4YOR005C MRPS16Q02608 121 aa2.3□□□□□ -2.04
DNL4YOR005C GAS3Q03655 524 aa2.3□□□□□ -2.04
DNL4YOR005C AIM36Q03798 255 aa2.3□□□□□ -2.04
DNL4YOR005C ECM11Q04110 302 aa2.3□□□□□ -2.04
DNL4YOR005C MFG1Q07684 458 aa2.3□□□□□ -2.04
DNL4YOR005C SLD7Q08457 257 aa2.3□□□□□ -2.04
DNL4YOR005C DSF1P0CX08 502 aa2.29□□□□□ -2.04
DNL4YOR005C YNR073CP0CX09 502 aa2.29□□□□□ -2.04
DNL4YOR005C YCP4P25349 247 aaKnown RBP2.29□□□□□ -2.04
DNL4YOR005C YCR022CP25620 114 aa2.29□□□□□ -2.04
DNL4YOR005C POP5P28005 173 aa2.29□□□□□ -2.04
DNL4YOR005C RPS1AP33442 255 aaKnown RBP2.29□□□□□ -2.04
DNL4YOR005C TIR2P33890 251 aa2.29□□□□□ -2.04
DNL4YOR005C YKL071WP36086 256 aa2.29□□□□□ -2.04
DNL4YOR005C MRP21P38175 177 aa2.29□□□□□ -2.04
DNL4YOR005C BIG1P38813 335 aa2.29□□□□□ -2.04
DNL4YOR005C YKE4P40544 346 aa2.29□□□□□ -2.04
DNL4YOR005C AVT4P50944 713 aa2.29□□□□□ -2.04
DNL4YOR005C UBC12P52491 188 aa2.29□□□□□ -2.04
DNL4YOR005C TPN1P53099 579 aa2.29□□□□□ -2.04
DNL4YOR005C MRH4P53166 561 aa2.29□□□□□ -2.04
DNL4YOR005C ZRG17P53735 605 aa2.29□□□□□ -2.04
DNL4YOR005C IBD2P53892 351 aa2.29□□□□□ -2.04
DNL4YOR005C ENT5Q03769 411 aaKnown RBP2.29□□□□□ -2.04
DNL4YOR005C PAM18Q07914 168 aa2.29□□□□□ -2.04
DNL4YOR005C YPL199CQ08954 240 aa2.29□□□□□ -2.04
DNL4YOR005C GPM2Q12008 311 aa2.29□□□□□ -2.04
DNL4YOR005C ATX2Q12067 313 aa2.29□□□□□ -2.04
DNL4YOR005C YBR298C-AQ8TGK4 73 aa2.29□□□□□ -2.04
DNL4YOR005C YER190C-BP0CX94 160 aa2.29□□□□□ -2.04
DNL4YOR005C YEL077W-AP0CX95 160 aa2.29□□□□□ -2.04
DNL4YOR005C YGR296C-BP0CX96 160 aa2.29□□□□□ -2.04
DNL4YOR005C YPL283W-BP0CX97 160 aa2.29□□□□□ -2.04
DNL4YOR005C YPR204C-AP0CX98 160 aa2.29□□□□□ -2.04
DNL4YOR005C MATALPHA1P0CY06 175 aa2.29□□□□□ -2.04
DNL4YOR005C HMLALPHA1P0CY07 175 aa2.29□□□□□ -2.04
DNL4YOR005C IDP1P21954 428 aaKnown RBP2.29□□□□□ -2.04
DNL4YOR005C PUT3P25502 979 aaPredicted RBP2.29□□□□□ -2.04
DNL4YOR005C HYM1P32464 399 aa2.29□□□□□ -2.04
DNL4YOR005C RCK1P38622 512 aa2.29□□□□□ -2.04
DNL4YOR005C GEP4P38812 185 aa2.29□□□□□ -2.04
DNL4YOR005C SWM2P40342 146 aa2.29□□□□□ -2.04
DNL4YOR005C YIL024CP40543 189 aa2.29□□□□□ -2.04
DNL4YOR005C MDV1P47025 714 aa2.29□□□□□ -2.04
DNL4YOR005C BOL2P53082 120 aa2.29□□□□□ -2.04
DNL4YOR005C POP6P53218 158 aa2.29□□□□□ -2.04
DNL4YOR005C CCE1Q03702 353 aa2.29□□□□□ -2.04
DNL4YOR005C VHS1Q03785 461 aa2.29□□□□□ -2.04
DNL4YOR005C PBP4Q07362 185 aaKnown RBP2.29□□□□□ -2.04
DNL4YOR005C YLR108CQ12259 485 aa2.29□□□□□ -2.04
DNL4YOR005C CRC1Q12289 327 aa2.29□□□□□ -2.04
DNL4YOR005C WTM1Q12363 437 aaKnown RBP2.29□□□□□ -2.04
DNL4YOR005C YPL247CQ12523 523 aa2.29□□□□□ -2.04
DNL4YOR005C RPL42AP0CX27 106 aaKnown RBP2.28□□□□□ -2.04
DNL4YOR005C RPL42BP0CX28 106 aaKnown RBP2.28□□□□□ -2.04
DNL4YOR005C GRX2P17695 143 aaKnown RBP2.28□□□□□ -2.04
DNL4YOR005C DAL82P21705 255 aa2.28□□□□□ -2.04
DNL4YOR005C PRR1P28708 518 aa2.28□□□□□ -2.04
DNL4YOR005C MAK5P38112 773 aaPredicted RBP2.28□□□□□ -2.04
DNL4YOR005C DTR1P38125 572 aa2.28□□□□□ -2.04
DNL4YOR005C SPO73P40031 143 aa2.28□□□□□ -2.04
DNL4YOR005C RGI1P40043 161 aaPredicted RBP2.28□□□□□ -2.04
DNL4YOR005C UTP18P40362 594 aaPredicted RBP2.28□□□□□ -2.04
DNL4YOR005C GAB1P41733 394 aa2.28□□□□□ -2.04
DNL4YOR005C YDR249CQ03787 373 aa2.28□□□□□ -2.04
DNL4YOR005C DXO1Q06349 442 aa2.28□□□□□ -2.04
DNL4YOR005C YOL131WQ08270 108 aa2.28□□□□□ -2.04
DNL4YOR005C JLP1Q12358 412 aa2.28□□□□□ -2.04
DNL4YOR005C FUS3P16892 353 aaKnown RBP2.28□□□□□ -2.04
DNL4YOR005C RBK1P25332 333 aa2.28□□□□□ -2.04
DNL4YOR005C ZRT3P34240 503 aa2.28□□□□□ -2.04
DNL4YOR005C CBT1P36038 271 aaPredicted RBP2.28□□□□□ -2.04
DNL4YOR005C SWD2P36104 329 aaPredicted RBP2.28□□□□□ -2.04
DNL4YOR005C MRPL3P36516 390 aa2.28□□□□□ -2.04
DNL4YOR005C CHK1P38147 527 aa2.28□□□□□ -2.04
DNL4YOR005C PTI1P39927 425 aaPredicted RBP2.28□□□□□ -2.04
DNL4YOR005C YEL028WP39989 153 aa2.28□□□□□ -2.04
DNL4YOR005C SOK1P40317 901 aa2.28□□□□□ -2.04
DNL4YOR005C NBP35P52920 328 aa2.28□□□□□ -2.04
DNL4YOR005C SHY1P53266 389 aa2.28□□□□□ -2.04
DNL4YOR005C FYV6P53913 173 aa2.28□□□□□ -2.04
DNL4YOR005C RPL15BP54780 204 aaPredicted RBP2.28□□□□□ -2.04
DNL4YOR005C STP1Q00947 519 aa2.28□□□□□ -2.04
DNL4YOR005C YMR181CQ03231 154 aa2.28□□□□□ -2.04
DNL4YOR005C MAK3Q03503 176 aa2.28□□□□□ -2.04
DNL4YOR005C SCS7Q03529 384 aa2.28□□□□□ -2.04
DNL4YOR005C YMD8Q03697 442 aa2.28□□□□□ -2.04
DNL4YOR005C TRM82Q03774 444 aa2.28□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 78 ms