RNA–Protein interactions for RNA: YIL056W

VHR1, Transcript of Transcriptional activator, yeast

Gene VHR1, Length 1,923 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHR1	YIL056W	GDS1	P41913	522 aa		2.36	□□□□□ -2.03
VHR1	YIL056W	ASG7	P46993	209 aa		2.36	□□□□□ -2.03
VHR1	YIL056W	YJR056C	P47115	236 aa		2.36	□□□□□ -2.03
VHR1	YIL056W	TPS1	Q00764	495 aa	Known RBP	2.36	□□□□□ -2.03
VHR1	YIL056W	ARC18	Q05933	178 aa	Known RBP	2.36	□□□□□ -2.03
VHR1	YIL056W	GAS2	Q06135	555 aa		2.36	□□□□□ -2.03
VHR1	YIL056W	DXO1	Q06349	442 aa		2.36	□□□□□ -2.03
VHR1	YIL056W	EMP46	Q12396	444 aa		2.36	□□□□□ -2.03
VHR1	YIL056W	NOT5	Q12514	560 aa	Predicted RBP	2.36	□□□□□ -2.03
VHR1	YIL056W	RPL28	P02406	149 aa	Known RBP	2.35	□□□□□ -2.03
VHR1	YIL056W	ITR2	P30606	609 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	LDS1	P31379	325 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	MCH2	P36032	473 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	CAF4	P36130	643 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	DER1	P38307	211 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	CUE1	P38428	203 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	PRE6	P40303	254 aa	Known RBP	2.35	□□□□□ -2.03
VHR1	YIL056W	YIA6	P40556	373 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	PRM10	P42946	383 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	YJR030C	P47101	745 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	YGL204C	P53089	101 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	USE1	P53146	245 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	ALG13	P53178	202 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	CDH1	P53197	566 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	YNL095C	P53932	642 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	CTR3	Q06686	241 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	GAT3	Q07928	141 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	YNG1	Q08465	219 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	YPL150W	Q12152	901 aa		2.35	□□□□□ -2.03
VHR1	YIL056W	TPI1	P00942	248 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	ZWF1	P11412	505 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	CDC10	P25342	322 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	QRI5	P32344	111 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	NTF2	P33331	125 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	CLG1	P35190	452 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	DRE2	P36152	348 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	YPT35	P38815	214 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	CIN5	P40917	295 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	YFL012W	P43580	148 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	YJR012C	P47087	207 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	SBH2	P52871	88 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	YGL235W	P53071	178 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	MMS2	P53152	137 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	NQM1	P53228	333 aa	Predicted RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	MAL13	P53338	473 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	YNR066C	P53752	436 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	ASI3	P53983	676 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	RNY1	Q02933	434 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	YDR248C	Q03786	193 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	YHC1	Q05900	231 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	YLR177W	Q06251	628 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	YLR053C	Q12026	108 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	NSL1	Q12143	216 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	IZH4	Q99393	312 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	SKI3	P17883	1432 aa	Known RBP	2.34	□□□□□ -2.03
VHR1	YIL056W	SIR4	P11978	1358 aa		2.34	□□□□□ -2.03
VHR1	YIL056W	HEM4	P06174	275 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	CBP6	P07253	162 aa	Predicted RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	DPM1	P14020	267 aa	Known RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	CPT1	P17898	393 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	RPL16B	P26785	198 aa	Known RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	YCR087C-A	P37263	153 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	ECM13	P38195	257 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	FLC3	P53121	802 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	NSA1	P53136	463 aa	Predicted RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	JAC1	P53193	184 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	NRK1	P53915	240 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	RNH201	P53942	307 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	YNL040W	P53960	456 aa	Predicted RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	NUP49	Q02199	472 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	RPL21A	Q02753	160 aa	Known RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	YCT1	Q12235	531 aa		2.34	□□□□□ -2.04
VHR1	YIL056W	SME1	Q12330	94 aa	Predicted RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	RPL21B	Q12672	160 aa	Known RBP	2.34	□□□□□ -2.04
VHR1	YIL056W	UBC8	P28263	218 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	YBR096W	P38256	230 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	CYC2	P38909	366 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	COG3	P40094	801 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	PMT4	P46971	762 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	YJR054W	P47114	497 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	NUP57	P48837	541 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	YMR166C	Q03829	368 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	SNX41	Q04053	625 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	SFH1	Q06168	426 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	YLR012C	Q07927	99 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	YOL019W	Q08157	551 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	TAF10	Q12030	206 aa		2.33	□□□□□ -2.04
VHR1	YIL056W	SAL1	D6W196	494 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	TFS1	P14306	219 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	EPT1	P22140	391 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	PMT2	P31382	759 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	2.32	□□□□□ -2.04	not detected
VHR1	YIL056W	SPS18	P32572	300 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	YKL075C	P36083	450 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	YPC1	P38298	316 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	ATG12	P38316	186 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	2.32	□□□□□ -2.04	not detected
VHR1	YIL056W	GOS1	P38736	223 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	YAP3	P38749	330 aa		2.32	□□□□□ -2.04
VHR1	YIL056W	BDH1	P39714	382 aa		2.32	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms