RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W RPB4P20433 221 aaPredicted RBP2.46□□□□□ -2.02
UPF3YGR072W PPA2P28239 310 aa2.46□□□□□ -2.02
UPF3YGR072W YHL044WP38727 235 aa2.46□□□□□ -2.02
UPF3YGR072W SMB1P40018 196 aaKnown RBP2.46□□□□□ -2.02
UPF3YGR072W UFD1P53044 361 aa2.46□□□□□ -2.02
UPF3YGR072W HST4P53688 370 aa2.46□□□□□ -2.02
UPF3YGR072W FMP41P53889 259 aaKnown RBP2.46□□□□□ -2.02
UPF3YGR072W TVP15Q03860 143 aa2.46□□□□□ -2.02
UPF3YGR072W SGT2Q12118 346 aaKnown RBP2.46□□□□□ -2.02
UPF3YGR072W YEL009C-AA0A023PZF2 135 aa2.45□□□□□ -2.02
UPF3YGR072W SGE1P33335 543 aa2.45□□□□□ -2.02
UPF3YGR072W MRPL39P36533 70 aa2.45□□□□□ -2.02
UPF3YGR072W HMT1P38074 348 aa2.45□□□□□ -2.02
UPF3YGR072W CUE1P38428 203 aa2.45□□□□□ -2.02
UPF3YGR072W MSS2P40990 351 aa2.45□□□□□ -2.02
UPF3YGR072W OTU1P43558 301 aa2.45□□□□□ -2.02
UPF3YGR072W GLG2P47011 380 aa2.45□□□□□ -2.02
UPF3YGR072W CGR1P53188 120 aa2.45□□□□□ -2.02
UPF3YGR072W AAH1P53909 347 aa2.45□□□□□ -2.02
UPF3YGR072W YPR147CQ06522 304 aaKnown RBP2.45□□□□□ -2.02
UPF3YGR072W MATALPHA1P0CY06 175 aa2.44□□□□□ -2.02
UPF3YGR072W HMLALPHA1P0CY07 175 aa2.44□□□□□ -2.02
UPF3YGR072W NHP6BP11633 99 aaKnown RBP2.44□□□□□ -2.02
UPF3YGR072W YAK1P14680 807 aa2.44□□□□□ -2.02
UPF3YGR072W YHL049CP38722 271 aa2.44□□□□□ -2.02
UPF3YGR072W COX15P40086 486 aa2.44□□□□□ -2.02
UPF3YGR072W HOC1P47124 396 aa2.44□□□□□ -2.02
UPF3YGR072W NOP13P53883 403 aaKnown RBP RIP-Chip data2.44□□□□□ -2.02not detected
UPF3YGR072W PGA2P53903 129 aa2.44□□□□□ -2.02
UPF3YGR072W RHO3Q00245 231 aaKnown RBP2.44□□□□□ -2.02
UPF3YGR072W LOA1Q06508 300 aa2.44□□□□□ -2.02
UPF3YGR072W YPL264CQ08980 353 aa2.44□□□□□ -2.02
UPF3YGR072W YOL163WP0CF20 169 aa2.43□□□□□ -2.02
UPF3YGR072W BMH1P29311 267 aaKnown RBP2.43□□□□□ -2.02
UPF3YGR072W VMA6P32366 345 aaKnown RBP2.43□□□□□ -2.02
UPF3YGR072W DOA4P32571 926 aa2.43□□□□□ -2.02
UPF3YGR072W AST1P35183 429 aa2.43□□□□□ -2.02
UPF3YGR072W CSG2P35206 410 aa2.43□□□□□ -2.02
UPF3YGR072W TRM7P38238 310 aaKnown RBP2.43□□□□□ -2.02
UPF3YGR072W YJR079WP47126 109 aa2.43□□□□□ -2.02
UPF3YGR072W OSH6Q02201 448 aa2.43□□□□□ -2.02
UPF3YGR072W GTO3Q04806 366 aa2.43□□□□□ -2.02
UPF3YGR072W SPO77Q06134 477 aa2.43□□□□□ -2.02
UPF3YGR072W PLB3Q08108 686 aa2.43□□□□□ -2.02
UPF3YGR072W YPS3Q12303 508 aa2.43□□□□□ -2.02
UPF3YGR072W ATG5Q12380 294 aa2.43□□□□□ -2.02
UPF3YGR072W ISD11Q6Q560 94 aa2.43□□□□□ -2.02
UPF3YGR072W NUP157P40064 1391 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W YKR104WP0CE69 306 aa2.42□□□□□ -2.02
UPF3YGR072W TCP1P12612 559 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W PRE7P23724 241 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W RPS5P26783 225 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W SSO1P32867 290 aa2.42□□□□□ -2.02
UPF3YGR072W YKT6P36015 200 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W VPS21P36017 210 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W SSH1P38353 490 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W SPL2P38839 148 aa2.42□□□□□ -2.02
UPF3YGR072W SUR2P38992 349 aa2.42□□□□□ -2.02
UPF3YGR072W PRE6P40303 254 aaKnown RBP2.42□□□□□ -2.02
UPF3YGR072W YFR045WP43617 309 aa2.42□□□□□ -2.02
UPF3YGR072W BUD13P46947 266 aaPredicted RBP2.42□□□□□ -2.02
UPF3YGR072W RPC17P47076 161 aa2.42□□□□□ -2.02
UPF3YGR072W NIF3P53081 288 aa2.42□□□□□ -2.02
UPF3YGR072W SPG4Q04438 115 aa2.42□□□□□ -2.02
UPF3YGR072W YDR124WQ04608 324 aa2.42□□□□□ -2.02
UPF3YGR072W COQ10Q08058 207 aa2.42□□□□□ -2.02
UPF3YGR072W YPR063CQ12160 140 aa2.42□□□□□ -2.02
UPF3YGR072W YBL008W-AQ3E821 79 aa2.42□□□□□ -2.02
UPF3YGR072W THP2O13539 261 aaKnown RBP2.41□□□□□ -2.02
UPF3YGR072W COQ1P18900 473 aa2.41□□□□□ -2.02
UPF3YGR072W RPO26P20435 155 aa2.41□□□□□ -2.02
UPF3YGR072W PBN1P25580 416 aa2.41□□□□□ -2.02
UPF3YGR072W DRE2P36152 348 aa2.41□□□□□ -2.02
UPF3YGR072W ARN2P38724 620 aa2.41□□□□□ -2.02
UPF3YGR072W YHR127WP38833 243 aaKnown RBP2.41□□□□□ -2.02
UPF3YGR072W TEM1P38987 245 aa2.41□□□□□ -2.02
UPF3YGR072W YHB1P39676 399 aaKnown RBP2.41□□□□□ -2.02
UPF3YGR072W YRB1P41920 201 aaKnown RBP2.41□□□□□ -2.02
UPF3YGR072W SNZ3P43545 298 aa2.41□□□□□ -2.02
UPF3YGR072W ECO1P43605 281 aa2.41□□□□□ -2.02
UPF3YGR072W JHD2P47156 728 aaPredicted RBP2.41□□□□□ -2.02
UPF3YGR072W ZRG17P53735 605 aa2.41□□□□□ -2.02
UPF3YGR072W SNZ2P53824 298 aa2.41□□□□□ -2.02
UPF3YGR072W GOT1Q03554 138 aa2.41□□□□□ -2.02
UPF3YGR072W BNA7Q04066 261 aa2.41□□□□□ -2.02
UPF3YGR072W RRP40Q08285 240 aaKnown RBP2.41□□□□□ -2.02
UPF3YGR072W SLD7Q08457 257 aa2.41□□□□□ -2.02
UPF3YGR072W SMT3Q12306 101 aaKnown RBP2.41□□□□□ -2.02
UPF3YGR072W PRR2Q12310 699 aa2.41□□□□□ -2.02
UPF3YGR072W NCB2Q92317 146 aa2.41□□□□□ -2.02
UPF3YGR072W DPB2P24482 689 aaPredicted RBP2.4□□□□□ -2.03
UPF3YGR072W YBL081WP38180 368 aaKnown RBP2.4□□□□□ -2.03
UPF3YGR072W GOS1P38736 223 aa2.4□□□□□ -2.03
UPF3YGR072W YMR144WP40214 342 aaKnown RBP2.4□□□□□ -2.03
UPF3YGR072W YIL059CP40520 121 aa2.4□□□□□ -2.03
UPF3YGR072W MRH4P53166 561 aa2.4□□□□□ -2.03
UPF3YGR072W ALG9P53868 555 aaKnown RBP2.4□□□□□ -2.03
UPF3YGR072W GRX3Q03835 250 aa2.4□□□□□ -2.03
UPF3YGR072W SYC1Q08553 188 aaPredicted RBP2.4□□□□□ -2.03
UPF3YGR072W IES4Q08561 116 aa2.4□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 27.4 ms