RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	TFS1	P14306	219 aa		1.09	□□□□□ -2.23
RTR1	YER139C	MEK1	P24719	497 aa	Predicted RBP	1.09	□□□□□ -2.23
RTR1	YER139C	RRT12	P25381	491 aa		1.09	□□□□□ -2.23
RTR1	YER139C	NTG1	P31378	399 aa		1.09	□□□□□ -2.23
RTR1	YER139C	SPT4	P32914	102 aa	Predicted RBP	1.09	□□□□□ -2.23
RTR1	YER139C	CAB3	P36076	571 aa		1.09	□□□□□ -2.23
RTR1	YER139C	RPC37	P36121	282 aa		1.09	□□□□□ -2.23
RTR1	YER139C	TRM7	P38238	310 aa	Known RBP	1.09	□□□□□ -2.23
RTR1	YER139C	PHO89	P38361	574 aa		1.09	□□□□□ -2.23
RTR1	YER139C	PET100	P38958	111 aa		1.09	□□□□□ -2.23
RTR1	YER139C	RCY1	P39531	840 aa		1.09	□□□□□ -2.23
RTR1	YER139C	AGP3	P43548	558 aa		1.09	□□□□□ -2.23
RTR1	YER139C	AGX1	P43567	385 aa		1.09	□□□□□ -2.23
RTR1	YER139C	LOC1	P43586	204 aa	Predicted RBP	1.09	□□□□□ -2.23
RTR1	YER139C	RPE1	P46969	238 aa		1.09	□□□□□ -2.23
RTR1	YER139C	NUP84	P52891	726 aa		1.09	□□□□□ -2.23
RTR1	YER139C	TPN1	P53099	579 aa		1.09	□□□□□ -2.23
RTR1	YER139C	MRPL50	P53724	139 aa		1.09	□□□□□ -2.23
RTR1	YER139C	SPP2	Q02521	185 aa		1.09	□□□□□ -2.23
RTR1	YER139C	CWC21	Q03375	135 aa	Known RBP	1.09	□□□□□ -2.23
RTR1	YER139C	YML018C	Q03730	393 aa		1.09	□□□□□ -2.23
RTR1	YER139C	ARV1	Q06541	321 aa		1.09	□□□□□ -2.23
RTR1	YER139C	BER1	Q06688	274 aa	Known RBP	1.09	□□□□□ -2.23
RTR1	YER139C	YDL144C	Q07589	356 aa		1.09	□□□□□ -2.23
RTR1	YER139C	YLL007C	Q07799	665 aa		1.09	□□□□□ -2.23
RTR1	YER139C	YPL150W	Q12152	901 aa		1.09	□□□□□ -2.23
RTR1	YER139C	RUD3	Q12234	484 aa	Known RBP	1.09	□□□□□ -2.23
RTR1	YER139C	RRP36	Q12481	300 aa	Predicted RBP	1.09	□□□□□ -2.23
RTR1	YER139C	FMP16	Q12497	93 aa		1.09	□□□□□ -2.23
RTR1	YER139C	TDH1	P00360	332 aa	Known RBP	1.08	□□□□□ -2.24
RTR1	YER139C	HIS1	P00498	297 aa	Known RBP	1.08	□□□□□ -2.24
RTR1	YER139C	RAD3	P06839	778 aa		1.08	□□□□□ -2.24
RTR1	YER139C	ZWF1	P11412	505 aa	Known RBP	1.08	□□□□□ -2.24
RTR1	YER139C	SNF6	P18888	332 aa		1.08	□□□□□ -2.24
RTR1	YER139C	DAL82	P21705	255 aa		1.08	□□□□□ -2.24
RTR1	YER139C	KRE6	P32486	720 aa		1.08	□□□□□ -2.24
RTR1	YER139C	HSM3	P38348	480 aa		1.08	□□□□□ -2.24
RTR1	YER139C	SPL2	P38839	148 aa		1.08	□□□□□ -2.24
RTR1	YER139C	SHQ1	P40486	507 aa	Predicted RBP	1.08	□□□□□ -2.24
RTR1	YER139C	BNA6	P43619	295 aa		1.08	□□□□□ -2.24
RTR1	YER139C	PIR5	P46999	287 aa		1.08	□□□□□ -2.24
RTR1	YER139C	YGL185C	P53100	379 aa		1.08	□□□□□ -2.24
RTR1	YER139C	SYF2	P53277	215 aa	Predicted RBP	1.08	□□□□□ -2.24
RTR1	YER139C	CPD1	P53314	239 aa		1.08	□□□□□ -2.24
RTR1	YER139C	YDR209C	Q03480	137 aa		1.08	□□□□□ -2.24
RTR1	YER139C	TVP15	Q03860	143 aa		1.08	□□□□□ -2.24
RTR1	YER139C	ECM18	Q04623	453 aa		1.08	□□□□□ -2.24
RTR1	YER139C	TAF9	Q05027	157 aa		1.08	□□□□□ -2.24
RTR1	YER139C	RDS3	Q06835	107 aa	Predicted RBP	1.08	□□□□□ -2.24
RTR1	YER139C	RRT8	Q08219	342 aa		1.08	□□□□□ -2.24
RTR1	YER139C	PER33	Q12144	273 aa		1.08	□□□□□ -2.24
RTR1	YER139C	YOR114W	Q12219	294 aa		1.08	□□□□□ -2.24
RTR1	YER139C	ATG5	Q12380	294 aa		1.08	□□□□□ -2.24
RTR1	YER139C	INO80	P53115	1489 aa		1.07	□□□□□ -2.24
RTR1	YER139C	YMR316C-A	I2HB70	103 aa		1.07	□□□□□ -2.24
RTR1	YER139C	ATP6	P00854	259 aa		1.07	□□□□□ -2.24
RTR1	YER139C	HIS3	P06633	220 aa		1.07	□□□□□ -2.24
RTR1	YER139C	MET16	P18408	261 aa	Predicted RBP	1.07	□□□□□ -2.24
RTR1	YER139C	YCR016W	P25617	290 aa	Known RBP	1.07	□□□□□ -2.24
RTR1	YER139C	BMH1	P29311	267 aa	Known RBP	1.07	□□□□□ -2.24
RTR1	YER139C	SUA5	P32579	426 aa		1.07	□□□□□ -2.24
RTR1	YER139C	CAT2	P32796	670 aa	Known RBP	1.07	□□□□□ -2.24
RTR1	YER139C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	1.07	□□□□□ -2.24	not detected
RTR1	YER139C	POP8	P38208	133 aa		1.07	□□□□□ -2.24
RTR1	YER139C	SUR2	P38992	349 aa		1.07	□□□□□ -2.24
RTR1	YER139C	GCD14	P46959	383 aa	Predicted RBP	1.07	□□□□□ -2.24
RTR1	YER139C	YJL118W	P47022	219 aa		1.07	□□□□□ -2.24
RTR1	YER139C	TAD2	P47058	250 aa		1.07	□□□□□ -2.24
RTR1	YER139C	CGR1	P53188	120 aa		1.07	□□□□□ -2.24
RTR1	YER139C	YNL095C	P53932	642 aa		1.07	□□□□□ -2.24
RTR1	YER139C	GMC2	Q06201	188 aa		1.07	□□□□□ -2.24
RTR1	YER139C	YLR173W	Q06247	608 aa		1.07	□□□□□ -2.24
RTR1	YER139C	NUP157	P40064	1391 aa	Known RBP	1.07	□□□□□ -2.24
RTR1	YER139C	YEL009C-A	A0A023PZF2	135 aa		1.06	□□□□□ -2.24
RTR1	YER139C	PET494	P07390	489 aa	Predicted RBP	1.06	□□□□□ -2.24
RTR1	YER139C	ATG15	P25641	520 aa		1.06	□□□□□ -2.24
RTR1	YER139C	ERG2	P32352	222 aa		1.06	□□□□□ -2.24
RTR1	YER139C	MSN4	P33749	630 aa		1.06	□□□□□ -2.24
RTR1	YER139C	COY1	P34237	679 aa		1.06	□□□□□ -2.24
RTR1	YER139C	BMH2	P34730	273 aa	Known RBP	1.06	□□□□□ -2.24
RTR1	YER139C	YHR045W	P38775	560 aa		1.06	□□□□□ -2.24
RTR1	YER139C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	1.06	□□□□□ -2.24	not detected
RTR1	YER139C	RPL10	P41805	221 aa	Known RBP	1.06	□□□□□ -2.24
RTR1	YER139C	YJR141W	P47172	347 aa	Predicted RBP	1.06	□□□□□ -2.24
RTR1	YER139C	DSK2	P48510	373 aa		1.06	□□□□□ -2.24
RTR1	YER139C	KAP114	P53067	1004 aa		1.06	□□□□□ -2.24
RTR1	YER139C	PEX31	P53203	462 aa		1.06	□□□□□ -2.24
RTR1	YER139C	TIM21	P53220	239 aa		1.06	□□□□□ -2.24
RTR1	YER139C	LSB1	P53281	241 aa		1.06	□□□□□ -2.24
RTR1	YER139C	SSU72	P53538	206 aa	Predicted RBP	1.06	□□□□□ -2.24
RTR1	YER139C	YNL134C	P53912	376 aa	Known RBP	1.06	□□□□□ -2.24
RTR1	YER139C	ALG11	P53954	548 aa	Known RBP	1.06	□□□□□ -2.24
RTR1	YER139C	PET117	Q02771	107 aa		1.06	□□□□□ -2.24
RTR1	YER139C	VPS60	Q03390	229 aa		1.06	□□□□□ -2.24
RTR1	YER139C	RNH1	Q04740	348 aa		1.06	□□□□□ -2.24
RTR1	YER139C	ADH6	Q04894	360 aa	Known RBP	1.06	□□□□□ -2.24
RTR1	YER139C	CTR3	Q06686	241 aa		1.06	□□□□□ -2.24
RTR1	YER139C	YOL019W	Q08157	551 aa		1.06	□□□□□ -2.24
RTR1	YER139C	TY3A-G	Q12173	290 aa		1.06	□□□□□ -2.24
RTR1	YER139C	ISD11	Q6Q560	94 aa		1.06	□□□□□ -2.24

Retrieved 100 of 5,963 RNA–protein pairs in 233.5 ms