RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	FAS1	P07149	2051 aa	Known RBP	2.08	□□□□□ -2.08
CLN3	YAL040C	PRB1	P09232	635 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	SAR1	P20606	190 aa	Known RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	FAR1	P21268	830 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	MCK1	P21965	375 aa	Known RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	MEK1	P24719	497 aa	Predicted RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	TAH1	P25638	111 aa	Predicted RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	CWP1	P28319	239 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	YMC1	P32331	307 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	KRE6	P32486	720 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	SUA5	P32579	426 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	RPS27A	P35997	82 aa	Known RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	RPL32	P38061	130 aa	Known RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	VBA2	P38358	474 aa	Known RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	RPS27B	P38711	82 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	PCF11	P39081	626 aa	Predicted RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	RRG9	P40156	214 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	YNL208W	P40159	199 aa	Known RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	YIL152W	P40455	235 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	UTP25	P40498	721 aa	Known RBP	2.07	□□□□□ -2.08
CLN3	YAL040C	SPG5	P42933	373 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	PMT6	P42934	759 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	OTU1	P43558	301 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	TAX4	P47030	604 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	YGL185C	P53100	379 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	YPL068C	Q02749	293 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	STD1	Q02794	444 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	SWP1	Q02795	286 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	RSC9	Q03124	581 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	SNZ1	Q03148	297 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	KRE28	Q04431	385 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	NAT4	Q04751	285 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	RNH202	Q05635	350 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	ATG17	Q06410	417 aa		2.07	□□□□□ -2.08
CLN3	YAL040C	MDM35	O60200	86 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	KSS1	P14681	368 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	STE4	P18851	423 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	RPB5	P20434	215 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	RPS5	P26783	225 aa	Known RBP	2.06	□□□□□ -2.08
CLN3	YAL040C	NDC1	P32500	655 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	PRP21	P32524	280 aa	Predicted RBP	2.06	□□□□□ -2.08
CLN3	YAL040C	ECM25	P32525	599 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	DOA1	P36037	715 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	HOT13	P36078	116 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	SBE22	P38814	852 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	ANS1	P38832	159 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	GPI16	P38875	610 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	IPT1	P38954	527 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	MBB1	P39534	108 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	YER085C	P40058	173 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	GAT2	P40209	560 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	FMC1	P40491	155 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	PAM16	P42949	149 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	YHC3	P47040	408 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	JHD2	P47156	728 aa	Predicted RBP	2.06	□□□□□ -2.08
CLN3	YAL040C	TRM9	P49957	279 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	TIM21	P53220	239 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	YGR126W	P53274	230 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	NUP49	Q02199	472 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	MAK3	Q03503	176 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	YMD8	Q03697	442 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	PLM2	Q04383	521 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	URC2	Q04411	772 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	RRN11	Q04712	507 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	FMP42	Q04991	504 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	ORM2	Q06144	216 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	SPC3	Q12133	184 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	NCE102	Q12207	173 aa	RIP-Chip data	2.06	□□□□□ -2.08	not detected
CLN3	YAL040C	SIA1	Q12212	622 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	FMP16	Q12497	93 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	LAG2	Q92325	660 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	MED11	Q99278	115 aa		2.06	□□□□□ -2.08
CLN3	YAL040C	GAL4	P04386	881 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	ARG80	P07249	177 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	PEP4	P07267	405 aa	Known RBP	2.05	□□□□□ -2.08
CLN3	YAL040C	NFT1	P0CE68	1218 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	ERD1	P16151	362 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	GPI12	P23797	304 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	STP22	P25604	385 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	RPL5	P26321	297 aa	Known RBP	2.05	□□□□□ -2.08
CLN3	YAL040C	VMA6	P32366	345 aa	Known RBP	2.05	□□□□□ -2.08
CLN3	YAL040C	ARO4	P32449	370 aa	Known RBP	2.05	□□□□□ -2.08
CLN3	YAL040C	NUF2	P33895	451 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	UTP11	P34247	250 aa	Predicted RBP	2.05	□□□□□ -2.08
CLN3	YAL040C	SPT10	P35208	640 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	YPK3	P38070	525 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	QDR3	P38227	689 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	FES1	P38260	290 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	ARN2	P38724	620 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	TRR2	P38816	342 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	YIL086C	P40503	102 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	HOC1	P47124	396 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	YDL186W	P48568	277 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	NUP57	P48837	541 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	MPA43	P53583	542 aa	Predicted RBP	2.05	□□□□□ -2.08
CLN3	YAL040C	COS1	P53822	381 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	COG5	P53951	403 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	ASI1	P54074	624 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	GTO3	Q04806	366 aa		2.05	□□□□□ -2.08
CLN3	YAL040C	ELP6	Q04868	273 aa		2.05	□□□□□ -2.08

Retrieved 100 of 5,963 RNA–protein pairs in 40.1 ms