RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C IMP3P32899 183 aaPredicted RBP2.35□□□□□ -2.03
DNL4YOR005C HOT13P36078 116 aa2.35□□□□□ -2.03
DNL4YOR005C NAT2P37293 288 aa2.35□□□□□ -2.03
DNL4YOR005C EGD2P38879 174 aaKnown RBP2.35□□□□□ -2.03
DNL4YOR005C ALD5P40047 520 aaKnown RBP2.35□□□□□ -2.03
DNL4YOR005C SHO1P40073 367 aa2.35□□□□□ -2.03
DNL4YOR005C DDI1P40087 428 aa2.35□□□□□ -2.03
DNL4YOR005C VRG4P40107 337 aa2.35□□□□□ -2.03
DNL4YOR005C FMC1P40491 155 aa2.35□□□□□ -2.03
DNL4YOR005C YIL054WP40524 105 aa2.35□□□□□ -2.03
DNL4YOR005C MSS11Q03825 758 aa2.35□□□□□ -2.03
DNL4YOR005C CDC123Q05791 360 aa2.35□□□□□ -2.03
DNL4YOR005C MDM36Q06820 579 aa2.35□□□□□ -2.03
DNL4YOR005C YLR112WQ12130 139 aa2.35□□□□□ -2.03
DNL4YOR005C TRM10Q12400 293 aa2.35□□□□□ -2.03
DNL4YOR005C YOR338WQ99326 363 aa2.35□□□□□ -2.03
DNL4YOR005C PEX3P28795 441 aa2.34□□□□□ -2.03
DNL4YOR005C ERG1P32476 496 aaKnown RBP2.34□□□□□ -2.03
DNL4YOR005C SSO1P32867 290 aa2.34□□□□□ -2.03
DNL4YOR005C ECM15P35195 104 aa2.34□□□□□ -2.03
DNL4YOR005C FRE2P36033 711 aa2.34□□□□□ -2.03
DNL4YOR005C UTP30P36144 274 aaKnown RBP2.34□□□□□ -2.03
DNL4YOR005C MOH1P38191 138 aa2.34□□□□□ -2.03
DNL4YOR005C NDT80P38830 627 aa2.34□□□□□ -2.03
DNL4YOR005C FHL1P39521 936 aa2.34□□□□□ -2.03
DNL4YOR005C PRM9P39551 298 aa2.34□□□□□ -2.03
DNL4YOR005C RBG1P39729 369 aa2.34□□□□□ -2.03
DNL4YOR005C HMF1P40037 129 aaKnown RBP2.34□□□□□ -2.03
DNL4YOR005C DSE1P40077 573 aa2.34□□□□□ -2.03
DNL4YOR005C AIM23P47015 356 aa2.34□□□□□ -2.03
DNL4YOR005C MRPL50P53724 139 aa2.34□□□□□ -2.03
DNL4YOR005C YNR048WP53740 393 aa2.34□□□□□ -2.03
DNL4YOR005C FRE4P53746 719 aa2.34□□□□□ -2.03
DNL4YOR005C NAT4Q04751 285 aa2.34□□□□□ -2.03
DNL4YOR005C BUR2Q05949 395 aa2.34□□□□□ -2.03
DNL4YOR005C FAR10Q06001 478 aa2.34□□□□□ -2.03
DNL4YOR005C CTS2Q06350 511 aa2.34□□□□□ -2.03
DNL4YOR005C SHS1Q07657 551 aa2.34□□□□□ -2.03
DNL4YOR005C RTR2Q12378 196 aa2.34□□□□□ -2.03
DNL4YOR005C PRP46Q12417 451 aaPredicted RBP2.34□□□□□ -2.03
DNL4YOR005C SAS5Q99314 248 aa2.34□□□□□ -2.03
DNL4YOR005C COX2P00410 251 aa2.34□□□□□ -2.04
DNL4YOR005C HIS3P06633 220 aa2.34□□□□□ -2.04
DNL4YOR005C UTR1P21373 530 aa2.34□□□□□ -2.04
DNL4YOR005C CHA1P25379 360 aaKnown RBP2.34□□□□□ -2.04
DNL4YOR005C YCR100CP25606 316 aa2.34□□□□□ -2.04
DNL4YOR005C ITR1P30605 584 aa2.34□□□□□ -2.04
DNL4YOR005C OAR1P35731 278 aa2.34□□□□□ -2.04
DNL4YOR005C KDX1P36005 433 aa2.34□□□□□ -2.04
DNL4YOR005C ECM13P38195 257 aa2.34□□□□□ -2.04
DNL4YOR005C SOP4P39543 234 aaPredicted RBP2.34□□□□□ -2.04
DNL4YOR005C RTS2P40962 232 aa2.34□□□□□ -2.04
DNL4YOR005C OTU1P43558 301 aa2.34□□□□□ -2.04
DNL4YOR005C BNA6P43619 295 aa2.34□□□□□ -2.04
DNL4YOR005C RTT101P47050 842 aa2.34□□□□□ -2.04
DNL4YOR005C NAS6P50086 228 aa2.34□□□□□ -2.04
DNL4YOR005C YGR168CP53293 376 aa2.34□□□□□ -2.04
DNL4YOR005C CWC25P53854 179 aaKnown RBP2.34□□□□□ -2.04
DNL4YOR005C REX2P54964 269 aaKnown RBP2.34□□□□□ -2.04
DNL4YOR005C COX20Q04935 205 aa2.34□□□□□ -2.04
DNL4YOR005C NEJ1Q06148 342 aa2.34□□□□□ -2.04
DNL4YOR005C IES4Q08561 116 aa2.34□□□□□ -2.04
DNL4YOR005C APC9Q12107 265 aa2.34□□□□□ -2.04
DNL4YOR005C BSC1Q12140 328 aa2.34□□□□□ -2.04
DNL4YOR005C ATG31Q12421 196 aa2.34□□□□□ -2.04
DNL4YOR005C UBA3Q99344 299 aa2.34□□□□□ -2.04
DNL4YOR005C IZH4Q99393 312 aa2.34□□□□□ -2.04
DNL4YOR005C PMD1P32634 1753 aa2.33□□□□□ -2.04
DNL4YOR005C TDH3P00359 332 aaKnown RBP RIP-Chip data2.33□□□□□ -2.04not detected
DNL4YOR005C ATP1P07251 545 aaKnown RBP2.33□□□□□ -2.04
DNL4YOR005C COS2P0CX12 379 aa2.33□□□□□ -2.04
DNL4YOR005C COS3P0CX13 379 aa2.33□□□□□ -2.04
DNL4YOR005C CAP2P13517 287 aa2.33□□□□□ -2.04
DNL4YOR005C CCA1P21269 546 aa2.33□□□□□ -2.04
DNL4YOR005C DBF2P22204 572 aa2.33□□□□□ -2.04
DNL4YOR005C GIT1P25346 518 aa2.33□□□□□ -2.04
DNL4YOR005C CWP1P28319 239 aa2.33□□□□□ -2.04
DNL4YOR005C SKT5P34226 696 aa2.33□□□□□ -2.04
DNL4YOR005C YBR056WP38081 501 aa2.33□□□□□ -2.04
DNL4YOR005C ECM8P38246 354 aa2.33□□□□□ -2.04
DNL4YOR005C YMR262WP38430 313 aa2.33□□□□□ -2.04
DNL4YOR005C YHR182WP38870 785 aa2.33□□□□□ -2.04
DNL4YOR005C AIM18P38884 321 aa2.33□□□□□ -2.04
DNL4YOR005C IPT1P38954 527 aa2.33□□□□□ -2.04
DNL4YOR005C VMA7P39111 118 aa2.33□□□□□ -2.04
DNL4YOR005C GAT1P43574 510 aa2.33□□□□□ -2.04
DNL4YOR005C AVT1P47082 602 aa2.33□□□□□ -2.04
DNL4YOR005C HAM1P47119 197 aaKnown RBP2.33□□□□□ -2.04
DNL4YOR005C HOC1P47124 396 aa2.33□□□□□ -2.04
DNL4YOR005C VPS25P47142 202 aa2.33□□□□□ -2.04
DNL4YOR005C CWC23P52868 283 aaPredicted RBP2.33□□□□□ -2.04
DNL4YOR005C CGR1P53188 120 aa2.33□□□□□ -2.04
DNL4YOR005C YGR117CP53270 476 aa2.33□□□□□ -2.04
DNL4YOR005C SLI1P53304 468 aa2.33□□□□□ -2.04
DNL4YOR005C COG5P53951 403 aa2.33□□□□□ -2.04
DNL4YOR005C SPP2Q02521 185 aa2.33□□□□□ -2.04
DNL4YOR005C BET5Q03630 159 aa2.33□□□□□ -2.04
DNL4YOR005C HPT1Q04178 221 aaKnown RBP2.33□□□□□ -2.04
DNL4YOR005C TRM12Q04235 462 aa2.33□□□□□ -2.04
DNL4YOR005C PEX12Q04370 399 aa2.33□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms