RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W SNA3P14359 133 aa4.32□□□□□ -1.72
ROT1YMR200W HEM15P16622 393 aa4.32□□□□□ -1.72
ROT1YMR200W BMH1P29311 267 aaKnown RBP4.32□□□□□ -1.72
ROT1YMR200W MEI4P29467 408 aa4.32□□□□□ -1.72
ROT1YMR200W YNK1P36010 153 aaKnown RBP4.32□□□□□ -1.72
ROT1YMR200W FIG1P38224 298 aa4.32□□□□□ -1.72
ROT1YMR200W BMT2P38278 337 aa4.32□□□□□ -1.72
ROT1YMR200W ARN1P38731 627 aa4.32□□□□□ -1.72
ROT1YMR200W GEP4P38812 185 aa4.32□□□□□ -1.72
ROT1YMR200W IKI1P38874 309 aa4.32□□□□□ -1.72
ROT1YMR200W SRP14P38985 146 aa4.32□□□□□ -1.72
ROT1YMR200W YER184CP39961 794 aa4.32□□□□□ -1.72
ROT1YMR200W YER121WP40076 114 aa4.32□□□□□ -1.72
ROT1YMR200W VRG4P40107 337 aa4.32□□□□□ -1.72
ROT1YMR200W YFL040WP43562 540 aa4.32□□□□□ -1.72
ROT1YMR200W JHD2P47156 728 aaPredicted RBP4.32□□□□□ -1.72
ROT1YMR200W GAT3Q07928 141 aa4.32□□□□□ -1.72
ROT1YMR200W RPL31AP0C2H8 113 aaKnown RBP4.31□□□□□ -1.72
ROT1YMR200W MCR1P36060 302 aaKnown RBP4.31□□□□□ -1.72
ROT1YMR200W YHK8P38776 514 aa4.31□□□□□ -1.72
ROT1YMR200W YPT35P38815 214 aaKnown RBP4.31□□□□□ -1.72
ROT1YMR200W SOP4P39543 234 aaPredicted RBP4.31□□□□□ -1.72
ROT1YMR200W NPT1P39683 429 aaKnown RBP4.31□□□□□ -1.72
ROT1YMR200W YKE4P40544 346 aa4.31□□□□□ -1.72
ROT1YMR200W LSM1P47017 172 aaKnown RBP4.31□□□□□ -1.72
ROT1YMR200W YJR030CP47101 745 aa4.31□□□□□ -1.72
ROT1YMR200W ADO1P47143 340 aaKnown RBP4.31□□□□□ -1.72
ROT1YMR200W YJR149WP47177 404 aa4.31□□□□□ -1.72
ROT1YMR200W CDC14Q00684 551 aa4.31□□□□□ -1.72
ROT1YMR200W CTF19Q02732 369 aa4.31□□□□□ -1.72
ROT1YMR200W PEX12Q04370 399 aa4.31□□□□□ -1.72
ROT1YMR200W SEC10Q06245 871 aa4.31□□□□□ -1.72
ROT1YMR200W TPO3Q06451 622 aa4.31□□□□□ -1.72
ROT1YMR200W CTR3Q06686 241 aa4.31□□□□□ -1.72
ROT1YMR200W RPL28P02406 149 aaKnown RBP4.3□□□□□ -1.72
ROT1YMR200W SSC1P0CS90 654 aaKnown RBP4.3□□□□□ -1.72
ROT1YMR200W POF1P25576 258 aa4.3□□□□□ -1.72
ROT1YMR200W FRE2P36033 711 aa4.3□□□□□ -1.72
ROT1YMR200W RFT1P38206 574 aaPredicted RBP4.3□□□□□ -1.72
ROT1YMR200W CUE1P38428 203 aa4.3□□□□□ -1.72
ROT1YMR200W FRT2P39734 528 aa4.3□□□□□ -1.72
ROT1YMR200W ASG7P46993 209 aa4.3□□□□□ -1.72
ROT1YMR200W YJR012CP47087 207 aa4.3□□□□□ -1.72
ROT1YMR200W SCW4P53334 386 aaKnown RBP4.3□□□□□ -1.72
ROT1YMR200W YNL095CP53932 642 aa4.3□□□□□ -1.72
ROT1YMR200W NUP100Q02629 959 aa4.3□□□□□ -1.72
ROT1YMR200W ECM11Q04110 302 aa4.3□□□□□ -1.72
ROT1YMR200W JLP1Q12358 412 aa4.3□□□□□ -1.72
ROT1YMR200W PAB1P04147 577 aaKnown RBP RIP-Chip data4.29□□□□□ -1.72not detected
ROT1YMR200W EXO70P19658 623 aa4.29□□□□□ -1.72
ROT1YMR200W YCR100CP25606 316 aa4.29□□□□□ -1.72
ROT1YMR200W YCR102CP25608 368 aa4.29□□□□□ -1.72
ROT1YMR200W MUD1P32605 298 aaKnown RBP4.29□□□□□ -1.72
ROT1YMR200W YEF1P32622 495 aa4.29□□□□□ -1.72
ROT1YMR200W CDC13P32797 924 aaKnown RBP4.29□□□□□ -1.72
ROT1YMR200W LOS1P33418 1100 aaPredicted RBP4.29□□□□□ -1.72
ROT1YMR200W YOX1P34161 385 aa4.29□□□□□ -1.72
ROT1YMR200W PRX1P34227 261 aaKnown RBP4.29□□□□□ -1.72
ROT1YMR200W ASK1P35734 292 aa4.29□□□□□ -1.72
ROT1YMR200W GPX2P38143 162 aa4.29□□□□□ -1.72
ROT1YMR200W OSH3P38713 996 aaKnown RBP4.29□□□□□ -1.72
ROT1YMR200W VAB2P40003 282 aa4.29□□□□□ -1.72
ROT1YMR200W PCI8P40512 444 aa4.29□□□□□ -1.72
ROT1YMR200W YFR057WP43625 151 aa4.29□□□□□ -1.72
ROT1YMR200W YJR079WP47126 109 aa4.29□□□□□ -1.72
ROT1YMR200W MGA1P53050 456 aa4.29□□□□□ -1.72
ROT1YMR200W MST27P53176 234 aa4.29□□□□□ -1.72
ROT1YMR200W MTM1P53320 366 aa4.29□□□□□ -1.72
ROT1YMR200W YNR048WP53740 393 aa4.29□□□□□ -1.72
ROT1YMR200W ARC18Q05933 178 aaKnown RBP4.29□□□□□ -1.72
ROT1YMR200W YER190C-BP0CX94 160 aa4.28□□□□□ -1.72
ROT1YMR200W YEL077W-AP0CX95 160 aa4.28□□□□□ -1.72
ROT1YMR200W YGR296C-BP0CX96 160 aa4.28□□□□□ -1.72
ROT1YMR200W YPL283W-BP0CX97 160 aa4.28□□□□□ -1.72
ROT1YMR200W YPR204C-AP0CX98 160 aa4.28□□□□□ -1.72
ROT1YMR200W AMD1P15274 810 aaKnown RBP4.28□□□□□ -1.72
ROT1YMR200W RPL16BP26785 198 aaKnown RBP4.28□□□□□ -1.72
ROT1YMR200W TIR2P33890 251 aa4.28□□□□□ -1.72
ROT1YMR200W YKL187CP34231 750 aa4.28□□□□□ -1.72
ROT1YMR200W PHD1P36093 366 aa4.28□□□□□ -1.72
ROT1YMR200W DBP7P36120 742 aaKnown RBP4.28□□□□□ -1.72
ROT1YMR200W YBR241CP38142 488 aa4.28□□□□□ -1.72
ROT1YMR200W SEO1P39709 593 aa4.28□□□□□ -1.72
ROT1YMR200W YAT2P40017 923 aa4.28□□□□□ -1.72
ROT1YMR200W SMB1P40018 196 aaKnown RBP4.28□□□□□ -1.72
ROT1YMR200W PRE6P40303 254 aaKnown RBP4.28□□□□□ -1.72
ROT1YMR200W ALG8P40351 577 aa4.28□□□□□ -1.72
ROT1YMR200W BMT5P40493 336 aa4.28□□□□□ -1.72
ROT1YMR200W YIL024CP40543 189 aa4.28□□□□□ -1.72
ROT1YMR200W GDS1P41913 522 aa4.28□□□□□ -1.72
ROT1YMR200W MRM2P53123 320 aa4.28□□□□□ -1.72
ROT1YMR200W USE1P53146 245 aa4.28□□□□□ -1.72
ROT1YMR200W SWC4P53201 476 aa4.28□□□□□ -1.72
ROT1YMR200W HCH1P53834 153 aa4.28□□□□□ -1.72
ROT1YMR200W CTL1Q03220 320 aaKnown RBP4.28□□□□□ -1.72
ROT1YMR200W SNX41Q04053 625 aa4.28□□□□□ -1.72
ROT1YMR200W YET3Q07451 203 aa4.28□□□□□ -1.72
ROT1YMR200W TPT1Q12272 230 aaKnown RBP4.28□□□□□ -1.72
ROT1YMR200W PUT1P09368 476 aa4.27□□□□□ -1.73
ROT1YMR200W RPL20AP0CX23 172 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 32.3 ms