RNA–Protein interactions for RNA: YDL084W

SUB2, Transcript of Component of the TREX complex required for nuclear mRNA export, yeast

Gene SUB2, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB2	YDL084W	SPO7	P18410	259 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	MSN1	P22148	382 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	YCK1	P23291	538 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	ERG9	P29704	444 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	NTH1	P32356	751 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	RER2	P35196	286 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	RPC25	P35718	212 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	PHD1	P36093	366 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	YPK3	P38070	525 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	ETR1	P38071	380 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	RCK1	P38622	512 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	ARN1	P38731	627 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	YHR127W	P38833	243 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	ATG7	P38862	630 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	CRG1	P38892	291 aa	RIP-Chip data	5.44	□□□□□ -1.54	not detected
SUB2	YDL084W	PAC2	P39937	518 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	YNL194C	P40169	301 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	IME4	P41833	600 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	NSE4	P43124	402 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	RPS12	P48589	143 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	VPS73	P53142	486 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	EFM6	P53970	246 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	ACT1	P60010	375 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	APS2	Q00381	147 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	UBC7	Q02159	165 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	NUP49	Q02199	472 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	UBP16	Q02863	499 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	ODC1	Q03028	310 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	SCS7	Q03529	384 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	HPF1	Q05164	967 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	YLR225C	Q05948	407 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	MRX9	Q07349	420 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	SAM4	Q08985	325 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	FSF1	Q12029	327 aa	Known RBP	5.44	□□□□□ -1.54
SUB2	YDL084W	RUP1	Q12242	671 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	TPO4	Q12256	659 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	TY1A-BL	Q12266	440 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	YOR012W	Q12351	137 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	GTT2	Q12390	233 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	RRD2	Q12461	358 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	ULS1	Q08562	1619 aa		5.44	□□□□□ -1.54
SUB2	YDL084W	HIR3	P47171	1648 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	GAL10	P04397	699 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	5.43	□□□□□ -1.54	not detected
SUB2	YDL084W	RPL31A	P0C2H8	113 aa	Known RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	RPL31B	P0C2H9	113 aa	Known RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	RPS16A	P0CX51	143 aa	Known RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	RPS16B	P0CX52	143 aa	Known RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	CUP2	P15315	225 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	NUP1	P20676	1076 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	YCR023C	P25351	611 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	ECT1	P33412	323 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	THI2	P38141	450 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	REG2	P38232	338 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	YAR028W	P39548	234 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	FIR1	P40020	876 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	COG3	P40094	801 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	ARG2	P40360	574 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	LAS21	P40367	830 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	YIR035C	P40579	254 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	YFL054C	P43549	646 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	MIC19	P43594	170 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	IKS1	P47042	667 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	YJR011C	P47086	261 aa	Predicted RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	YPL068C	Q02749	293 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	YHM2	Q04013	314 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	TMN2	Q04562	672 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	NAT4	Q04751	285 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	YLR179C	Q06252	201 aa	Known RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	SHS1	Q07657	551 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	SLD7	Q08457	257 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	FCF2	Q12035	217 aa	Predicted RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	TRM10	Q12400	293 aa		5.43	□□□□□ -1.54
SUB2	YDL084W	LPX1	Q12405	387 aa	Known RBP	5.43	□□□□□ -1.54
SUB2	YDL084W	YOR1	P53049	1477 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	PDR5	P33302	1511 aa	Known RBP	5.42	□□□□□ -1.54
SUB2	YDL084W	MLP2	P40457	1679 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	RPO21	P04050	1733 aa	Known RBP	5.42	□□□□□ -1.54
SUB2	YDL084W	PPR1	P07272	904 aa	Predicted RBP	5.42	□□□□□ -1.54
SUB2	YDL084W	ADH7	P25377	361 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	EHD3	P28817	500 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	CYS4	P32582	507 aa	Known RBP	5.42	□□□□□ -1.54
SUB2	YDL084W	STE14	P32584	239 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	UGP1	P32861	499 aa	Known RBP	5.42	□□□□□ -1.54
SUB2	YDL084W	COS9	P36034	407 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	FLR1	P38124	548 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	CST26	P38226	397 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	MLH1	P38920	769 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	MAD2	P40958	196 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	SPG5	P42933	373 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	MRX5	P47007	382 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	IRC8	P47046	822 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	COS10	P52924	374 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	YPR003C	P53394	754 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	HHO1	P53551	258 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	INN1	P53901	409 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	ABF2	Q02486	183 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	RXT3	Q07458	294 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	SCP1	Q08873	200 aa		5.42	□□□□□ -1.54
SUB2	YDL084W	JLP1	Q12358	412 aa		5.42	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 12 ms