RNA–Protein interactions for RNA: YBR135W

CKS1, Transcript of Cyclin-dependent protein kinase regulatory subunit and adaptor, yeast

Gene CKS1, Length 453 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CKS1	YBR135W	SPL2	P38839	148 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	ATG7	P38862	630 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	YHR182W	P38870	785 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	PRP39	P39682	629 aa	Known RBP	4.09	□□□□□ -1.75
CKS1	YBR135W	EGT2	P42835	1041 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	ATG18	P43601	500 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	BIR1	P47134	954 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	TRF5	P48561	642 aa	Known RBP	4.09	□□□□□ -1.75
CKS1	YBR135W	LST7	P53237	242 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	NAT4	Q04751	285 aa		4.09	□□□□□ -1.75
CKS1	YBR135W	YLL053C	P0CD98	152 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	RAD51	P25454	400 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	IST2	P38250	946 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	SSO2	P39926	295 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	AIM10	P39965	576 aa	Known RBP	4.08	□□□□□ -1.76
CKS1	YBR135W	KEG1	P43614	200 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	CIN2	P46670	268 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	SHY1	P53266	389 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
CKS1	YBR135W	IRC4	Q03036	179 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	SCW10	Q04951	389 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	YOL075C	Q08234	1294 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	MDY2	Q12285	212 aa		4.08	□□□□□ -1.76
CKS1	YBR135W	CBP2	P03874	630 aa	Predicted RBP	4.07	□□□□□ -1.76
CKS1	YBR135W	RPC40	P07703	335 aa	Known RBP	4.07	□□□□□ -1.76
CKS1	YBR135W	IME2	P32581	645 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	PCL7	P40186	285 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	CRH1	P53301	507 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	REX2	P54964	269 aa	Known RBP	4.07	□□□□□ -1.76
CKS1	YBR135W	ABZ2	Q03266	374 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	CSI1	Q04368	295 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	YPR172W	Q06608	200 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	RBD2	Q12270	262 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	YDR262W	Q12331	272 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	RGS2	Q99188	309 aa		4.07	□□□□□ -1.76
CKS1	YBR135W	FLO11	P08640	1367 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	VPS63	O13549	108 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	RPS19A	P07280	144 aa	Known RBP	4.06	□□□□□ -1.76
CKS1	YBR135W	RPS19B	P07281	144 aa	Predicted RBP	4.06	□□□□□ -1.76
CKS1	YBR135W	ARF2	P19146	181 aa	Known RBP	4.06	□□□□□ -1.76
CKS1	YBR135W	UTR1	P21373	530 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	RVS161	P25343	265 aa	Known RBP	4.06	□□□□□ -1.76
CKS1	YBR135W	PET18	P25362	215 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	CIN8	P27895	1000 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	PRR1	P28708	518 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	CAB3	P36076	571 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	MRPL10	P36520	322 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	RTC2	P38279	296 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	RBG1	P39729	369 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	RTT105	P40063	208 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	RNH1	Q04740	348 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	YHC1	Q05900	231 aa	Known RBP	4.06	□□□□□ -1.76
CKS1	YBR135W	NAG1	Q8TGN9	163 aa		4.06	□□□□□ -1.76
CKS1	YBR135W	DUR1,2	P32528	1835 aa	Known RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	RAD1	P06777	1100 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	RPS18A	P0CX55	146 aa	Known RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	RPS18B	P0CX56	146 aa	Predicted RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	RPL16A	P26784	199 aa	Known RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	HXT1	P32465	570 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	RIB7	P33312	244 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	YKR015C	P36111	568 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	YPT35	P38815	214 aa	Known RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	BAT1	P38891	393 aa	Known RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	YER186C	P40101	306 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	YNL208W	P40159	199 aa	Known RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	BTT1	P40314	149 aa	Predicted RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	AIM20	P40451	204 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	GAB1	P41733	394 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	YFH7	P43591	353 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	AIP1	P46680	615 aa	Known RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	YJR030C	P47101	745 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	CSM3	Q04659	317 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	MSC3	Q05812	728 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	YDL109C	Q12103	647 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	RRP36	Q12481	300 aa	Predicted RBP	4.05	□□□□□ -1.76
CKS1	YBR135W	NCB2	Q92317	146 aa		4.05	□□□□□ -1.76
CKS1	YBR135W	HEM4	P06174	275 aa		4.04	□□□□□ -1.76
CKS1	YBR135W	GCD2	P12754	651 aa	Predicted RBP	4.04	□□□□□ -1.76
CKS1	YBR135W	AAT2	P23542	418 aa	Known RBP	4.04	□□□□□ -1.76
CKS1	YBR135W	MKK1	P32490	508 aa		4.04	□□□□□ -1.76
CKS1	YBR135W	LSM12	P38828	187 aa	Known RBP	4.04	□□□□□ -1.76
CKS1	YBR135W	MIG3	P39943	394 aa		4.04	□□□□□ -1.76
CKS1	YBR135W	OXA1	P39952	402 aa		4.04	□□□□□ -1.76
CKS1	YBR135W	UTP18	P40362	594 aa	Predicted RBP	4.04	□□□□□ -1.76
CKS1	YBR135W	SHE10	P53075	577 aa		4.04	□□□□□ -1.76
CKS1	YBR135W	SKI8	Q02793	397 aa	Predicted RBP	4.04	□□□□□ -1.76
CKS1	YBR135W	WTM1	Q12363	437 aa	Known RBP	4.04	□□□□□ -1.76
CKS1	YBR135W	UBA3	Q99344	299 aa		4.04	□□□□□ -1.76
CKS1	YBR135W	GSC2	P40989	1895 aa		4.04	□□□□□ -1.76
CKS1	YBR135W	ERG9	P29704	444 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	YEL045C	P32616	141 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
CKS1	YBR135W	YCH1	P42937	148 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	NAS6	P50086	228 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	YMR010W	Q03687	405 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	YET2	Q04210	160 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	YLR297W	Q05899	129 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	MCT1	Q12283	360 aa		4.03	□□□□□ -1.76
CKS1	YBR135W	RPL23A	P0CX41	137 aa	Known RBP	4.02	□□□□□ -1.77
CKS1	YBR135W	RPL23B	P0CX42	137 aa	Known RBP	4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms