RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 BUB1O43683 1085 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 CD4P01730 458 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ZNF746Q6NUN9 644 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 KLHL7Q8IXQ5 586 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 PRPF31Q8WWY3 499 aaKnown RBP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ZNF668Q96K58 619 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 UBN1Q9NPG3 1134 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 SERPING1P05155 500 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ITGA4P13612 1032 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 SCP2P22307 547 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 GRIK1P39086 918 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 PKP1Q13835 747 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ARFGAP2Q8N6H7 521 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 RPGRIP1Q96KN7 1286 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 TNIP3Q96KP6 325 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 PPARGP37231 505 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 FKBP1BP68106 108 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 SPATA2LQ8IUW3 424 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ZNF148Q9UQR1 794 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 GPR182O15218 404 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ATP2C1P98194 919 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 PRKCEQ02156 737 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 HDXQ7Z353 690 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 RDM1Q8NG50 284 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 AKT1S1Q96B36 256 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 TRPV6Q9H1D0 765 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 TRIM17Q9Y577 477 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 SCINQ9Y6U3 715 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 VIL1P09327 827 aaKnown RBP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 EPHB1P54762 984 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 CDCA5Q96FF9 252 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 YME1L1Q96TA2 773 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 PPP1R9AQ9ULJ8 1098 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 TMX2Q9Y320 296 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 IKBKBO14920 756 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.55□□□□□ -0.56
PTCH1-206ENST00000421141 ARFGEF2Q9Y6D5 1785 aa11.55□□□□□ -0.56
PTCH1-206ENST00000421141 NRXN3Q9Y4C0 1643 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 HERVK_113P62684 666 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 KRT33BQ14525 404 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 DNERQ8NFT8 737 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 ZC3H15Q8WU90 426 aaKnown RBP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 LRRC4BQ9NT99 713 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 CACNA1SQ13698 1873 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 NFIAQ12857 509 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 TMEM132DQ14C87 1099 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 BBOF1Q8ND07 529 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 OXER1Q8TDS5 423 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 CALN1Q9BXU9 219 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 MAD2L2Q9UI95 211 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 EPN1Q9Y6I3 576 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 I3L4J1 428 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 CALB1P05937 261 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 PSMA2P25787 234 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 FYB2Q5VWT5 728 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 FAM117BQ6P1L5 589 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 FAM133AQ8N9E0 248 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 CDKL2Q92772 493 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 GPRASP2Q96D09 838 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 JMJD4Q9H9V9 463 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 DYNC1I1O14576 645 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 LARGE1O95461 756 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 TCP11X2Q5H9J9 407 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 PLCD4Q9BRC7 762 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 ITGB4P16144 1822 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 TMEM63CQ9P1W3 806 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 GOLGA4Q13439 2230 aaKnown RBP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 NFAT5O94916 1531 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 E9PMD0 336 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 IL18RAPO95256 599 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 S100BP04271 92 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 MTMR3Q13615 1198 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 ENOSF1Q7L5Y1 443 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 REM2Q8IYK8 340 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 PARD3BQ8TEW8 1205 aa11.54□□□□□ -0.56
PTCH1-206ENST00000421141 HMX1Q9NP08 348 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 FAM217BQ9NTX9 383 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-206ENST00000421141 DACT2Q5SW24 774 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 TMEM270Q6UE05 265 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 KCTD17Q8N5Z5 321 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 TMEM143Q96AN5 459 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 CALR3Q96L12 384 aaKnown RBP11.53□□□□□ -0.56
PTCH1-206ENST00000421141 NDST4Q9H3R1 872 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-206ENST00000421141 TMEM88BA6NKF7 163 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 POTEAQ6S8J7 498 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 APPL2Q8NEU8 664 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 HOMER3Q9NSC5 361 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 IRAK4Q9NWZ3 460 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 HOXA2O43364 376 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 TCF7P36402 384 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-206ENST00000421141 EXOSC10Q01780 885 aaKnown RBP11.53□□□□□ -0.56
PTCH1-206ENST00000421141 PPIL2Q13356 520 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 EMC2Q15006 297 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 CDO1Q16878 200 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 ZMYND12Q9H0C1 365 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 MSCO60682 206 aa11.53□□□□□ -0.56
PTCH1-206ENST00000421141 VIMP08670 466 aaKnown RBP11.53□□□□□ -0.56
PTCH1-206ENST00000421141 ATF2P15336 505 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms