RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 NISCHQ9Y2I1 1504 aa19.53■□□□□ 0.72
PTCH1-206ENST00000421141 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
PTCH1-206ENST00000421141 SHROOM4Q9ULL8 1493 aa17.95■□□□□ 0.46
PTCH1-206ENST00000421141 SUPT5HO00267 1087 aaKnown RBP17.91■□□□□ 0.46
PTCH1-206ENST00000421141 FAM9AQ8IZU1 332 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-206ENST00000421141 EHMT2Q96KQ7 1210 aa17.17■□□□□ 0.34
PTCH1-206ENST00000421141 APLP2Q06481 763 aa17.12■□□□□ 0.33
PTCH1-206ENST00000421141 ABCC9O60706 1549 aa17.08■□□□□ 0.32
PTCH1-206ENST00000421141 CCDC180Q9P1Z9 1646 aa16.84■□□□□ 0.29
PTCH1-206ENST00000421141 TRIM41Q8WV44 630 aa16.78■□□□□ 0.28
PTCH1-206ENST00000421141 ATP1B4Q9UN42 357 aaPredicted RBP16.72■□□□□ 0.27
PTCH1-206ENST00000421141 RANGAP1P46060 587 aaPredicted RBP16.71■□□□□ 0.27
PTCH1-206ENST00000421141 PABPN1Q86U42 306 aaKnown RBP eCLIP16.63■□□□□ 0.25
PTCH1-206ENST00000421141 UBTFP17480 764 aaKnown RBP16.61■□□□□ 0.25
PTCH1-206ENST00000421141 TTBK1Q5TCY1 1321 aaPredicted RBP16.5■□□□□ 0.23
PTCH1-206ENST00000421141 SCRIBQ14160 1630 aa16.4■□□□□ 0.22
PTCH1-206ENST00000421141 RB1CC1Q8TDY2 1594 aa16.34■□□□□ 0.21
PTCH1-206ENST00000421141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
PTCH1-206ENST00000421141 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
PTCH1-206ENST00000421141 MYT1LQ9UL68 1186 aa16.3■□□□□ 0.2
PTCH1-206ENST00000421141 NACADO15069 1562 aa16.11■□□□□ 0.17
PTCH1-206ENST00000421141 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
PTCH1-206ENST00000421141 ZCCHC6Q5VYS8 1495 aaKnown RBP16.11■□□□□ 0.17
PTCH1-206ENST00000421141 FBLN2P98095 1184 aa16.04■□□□□ 0.16
PTCH1-206ENST00000421141 CCER1Q8TC90 406 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-206ENST00000421141 PELP1Q8IZL8 1130 aaKnown RBP16■□□□□ 0.15
PTCH1-206ENST00000421141 ZEB1P37275 1124 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-206ENST00000421141 ITGAEP38570 1179 aa15.86■□□□□ 0.13
PTCH1-206ENST00000421141 CHIC1Q5VXU3 224 aa15.85■□□□□ 0.13
PTCH1-206ENST00000421141 PPARGC1BQ86YN6 1023 aaKnown RBP15.84■□□□□ 0.13
PTCH1-206ENST00000421141 LOC105371045A0A1W2PR82 267 aa15.67■□□□□ 0.1
PTCH1-206ENST00000421141 FAM50AQ14320 339 aaKnown RBP15.66■□□□□ 0.1
PTCH1-206ENST00000421141 TRIM26Q12899 539 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-206ENST00000421141 ERCC6Q03468 1493 aa15.64■□□□□ 0.09
PTCH1-206ENST00000421141 BAZ1BQ9UIG0 1483 aaKnown RBP15.63■□□□□ 0.09
PTCH1-206ENST00000421141 NPM1P06748 294 aaKnown RBP eCLIP15.61■□□□□ 0.09
PTCH1-206ENST00000421141 POLR3GLQ9BT43 218 aa15.57■□□□□ 0.08
PTCH1-206ENST00000421141 CDK11AQ9UQ88 783 aaPredicted RBP15.56■□□□□ 0.08
PTCH1-206ENST00000421141 SLC4A1APQ9BWU0 796 aaKnown RBP15.56■□□□□ 0.08
PTCH1-206ENST00000421141 DCAF1Q9Y4B6 1507 aa15.56■□□□□ 0.08
PTCH1-206ENST00000421141 TRIM52Q96A61 297 aa15.52■□□□□ 0.07
PTCH1-206ENST00000421141 BAZ1AQ9NRL2 1556 aaPredicted RBP15.52■□□□□ 0.07
PTCH1-206ENST00000421141 CHMP7Q8WUX9 453 aaPredicted RBP15.5■□□□□ 0.07
PTCH1-206ENST00000421141 ESF1Q9H501 851 aaKnown RBP15.5■□□□□ 0.07
PTCH1-206ENST00000421141 P3H3Q8IVL6 736 aa15.49■□□□□ 0.07
PTCH1-206ENST00000421141 CENPBP07199 599 aaPredicted RBP15.48■□□□□ 0.07
PTCH1-206ENST00000421141 ARID3CA6NKF2 412 aa15.45■□□□□ 0.06
PTCH1-206ENST00000421141 CSRNP3Q8WYN3 585 aa15.44■□□□□ 0.06
PTCH1-206ENST00000421141 BCANQ96GW7 911 aa15.43■□□□□ 0.06
PTCH1-206ENST00000421141 NEFLP07196 543 aa15.39■□□□□ 0.05
PTCH1-206ENST00000421141 SMARCA2P51531 1590 aa15.38■□□□□ 0.05
PTCH1-206ENST00000421141 ZNF777Q9ULD5 760 aaPredicted RBP15.37■□□□□ 0.05
PTCH1-206ENST00000421141 RSF1Q96T23 1441 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-206ENST00000421141 MYO15BQ96JP2 1530 aa15.26■□□□□ 0.03
PTCH1-206ENST00000421141 CNGB1Q14028 1251 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-206ENST00000421141 STAG3Q9UJ98 1225 aa15.25■□□□□ 0.03
PTCH1-206ENST00000421141 PLPPR3Q6T4P5 718 aa15.23■□□□□ 0.03
PTCH1-206ENST00000421141 NEUROD1Q13562 356 aa15.23■□□□□ 0.03
PTCH1-206ENST00000421141 ZNF326Q5BKZ1 582 aaKnown RBP15.22■□□□□ 0.03
PTCH1-206ENST00000421141 YTHDC1Q96MU7 727 aaKnown RBP15.2■□□□□ 0.02
PTCH1-206ENST00000421141 PDS5BQ9NTI5 1447 aa15.17■□□□□ 0.02
PTCH1-206ENST00000421141 KIF27Q86VH2 1401 aa15.17■□□□□ 0.02
PTCH1-206ENST00000421141 ERICH6Q7L0X2 663 aa15.16■□□□□ 0.02
PTCH1-206ENST00000421141 WRNQ14191 1432 aaPredicted RBP eCLIP15.16■□□□□ 0.02
PTCH1-206ENST00000421141 CECR2Q9BXF3 1484 aa15.14■□□□□ 0.01
PTCH1-206ENST00000421141 WIZO95785 1651 aa15.12■□□□□ 0.01
PTCH1-206ENST00000421141 MTUS2Q5JR59 1369 aa15.11■□□□□ 0.01
PTCH1-206ENST00000421141 EEA1Q15075 1411 aa15.1■□□□□ 0.01
PTCH1-206ENST00000421141 CHGAP10645 457 aaKnown RBP15.08■□□□□ 0.01
PTCH1-206ENST00000421141 SMARCA4P51532 1647 aa15.08■□□□□ 0
PTCH1-206ENST00000421141 TSPY4P0CV99 314 aa15.08■□□□□ 0
PTCH1-206ENST00000421141 TSPY10P0CW01 314 aa15.08■□□□□ 0
PTCH1-206ENST00000421141 KCNH8Q96L42 1107 aa15.06■□□□□ 0
PTCH1-206ENST00000421141 EIF4G1Q04637 1599 aaKnown RBP15.05■□□□□ -0
PTCH1-206ENST00000421141 PLEKHD1A6NEE1 506 aa15.04■□□□□ -0
PTCH1-206ENST00000421141 NEFMP07197 916 aa15.04■□□□□ -0
PTCH1-206ENST00000421141 GOLGA3Q08378 1498 aa15.04■□□□□ -0
PTCH1-206ENST00000421141 MROH2BQ7Z745 1585 aa15.02■□□□□ -0
PTCH1-206ENST00000421141 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.02□□□□□ -0.01
PTCH1-206ENST00000421141 SLC24A1O60721 1099 aa15.01□□□□□ -0.01
PTCH1-206ENST00000421141 ARID4BQ4LE39 1312 aaPredicted RBP15.01□□□□□ -0.01
PTCH1-206ENST00000421141 TOP2AP11388 1531 aaKnown RBP15□□□□□ -0.01
PTCH1-206ENST00000421141 TRHP20396 242 aaPredicted RBP15□□□□□ -0.01
PTCH1-206ENST00000421141 CLIP1P30622 1438 aa14.99□□□□□ -0.01
PTCH1-206ENST00000421141 HRCP23327 699 aa14.99□□□□□ -0.01
PTCH1-206ENST00000421141 CEP164Q9UPV0 1460 aa14.96□□□□□ -0.01
PTCH1-206ENST00000421141 CUX2O14529 1486 aa14.95□□□□□ -0.02
PTCH1-206ENST00000421141 CCDC88BA6NC98 1476 aa14.94□□□□□ -0.02
PTCH1-206ENST00000421141 DAXXQ9UER7 740 aaPredicted RBP14.93□□□□□ -0.02
PTCH1-206ENST00000421141 CHIC2Q9UKJ5 165 aa14.91□□□□□ -0.02
PTCH1-206ENST00000421141 ANP32CO43423 234 aa14.89□□□□□ -0.03
PTCH1-206ENST00000421141 TONSLQ96HA7 1378 aa14.89□□□□□ -0.03
PTCH1-206ENST00000421141 SOGA1O94964 1423 aa14.88□□□□□ -0.03
PTCH1-206ENST00000421141 CARMIL2Q6F5E8 1435 aa14.87□□□□□ -0.03
PTCH1-206ENST00000421141 ACIN1Q9UKV3 1341 aaKnown RBP14.86□□□□□ -0.03
PTCH1-206ENST00000421141 PPP1R15AO75807 674 aaPredicted RBP14.85□□□□□ -0.03
PTCH1-206ENST00000421141 ABCC8Q09428 1581 aa14.85□□□□□ -0.03
PTCH1-206ENST00000421141 ATAD2BQ9ULI0 1458 aa14.84□□□□□ -0.03
PTCH1-206ENST00000421141 FHAD1B1AJZ9 1412 aa14.83□□□□□ -0.03
PTCH1-206ENST00000421141 CARMIL1Q5VZK9 1371 aa14.83□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms