RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeastyeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTF4YPR135W YLR346CQ06139 101 aa3.4□□□□□ -1.86
CTF4YPR135W IXR1P33417 597 aa3.4□□□□□ -1.87
CTF4YPR135W NUP42P49686 430 aaKnown RBP3.4□□□□□ -1.87
CTF4YPR135W YGR035CP53222 116 aa3.4□□□□□ -1.87
CTF4YPR135W FPK1P53739 893 aa3.4□□□□□ -1.87
CTF4YPR135W DSF2P38213 736 aa3.4□□□□□ -1.87
CTF4YPR135W TBF1Q02457 562 aa3.4□□□□□ -1.87
CTF4YPR135W ALR1Q08269 859 aa3.4□□□□□ -1.87
CTF4YPR135W TYW1Q08960 810 aaKnown RBP3.4□□□□□ -1.87
CTF4YPR135W YIR007WP40566 764 aa3.39□□□□□ -1.87
CTF4YPR135W RPA14P50106 137 aa3.39□□□□□ -1.87
CTF4YPR135W MTC5Q03897 1148 aa3.39□□□□□ -1.87
CTF4YPR135W GLY1P37303 387 aaKnown RBP3.38□□□□□ -1.87
CTF4YPR135W NUP85P46673 744 aa3.38□□□□□ -1.87
CTF4YPR135W YPR097WQ06839 1073 aa3.38□□□□□ -1.87
CTF4YPR135W XRN1P22147 1528 aaKnown RBP3.38□□□□□ -1.87
CTF4YPR135W DIT2P21595 489 aa3.38□□□□□ -1.87
CTF4YPR135W SCJ1P25303 377 aa3.38□□□□□ -1.87
CTF4YPR135W TRK2P28584 889 aa3.38□□□□□ -1.87
CTF4YPR135W SCW11P53189 542 aa3.38□□□□□ -1.87
CTF4YPR135W RPO31P04051 1460 aa3.38□□□□□ -1.87
CTF4YPR135W PUS6P53294 404 aa3.37□□□□□ -1.87
CTF4YPR135W HPF1Q05164 967 aa3.37□□□□□ -1.87
CTF4YPR135W GEA2P39993 1459 aaKnown RBP3.37□□□□□ -1.87
CTF4YPR135W TRM1P15565 570 aaKnown RBP3.37□□□□□ -1.87
CTF4YPR135W MIP1P15801 1254 aa3.37□□□□□ -1.87
CTF4YPR135W MRT4P33201 236 aaKnown RBP3.37□□□□□ -1.87
CTF4YPR135W MMS1Q06211 1407 aa3.37□□□□□ -1.87
CTF4YPR135W RKR1Q04781 1562 aa3.37□□□□□ -1.87
CTF4YPR135W ITT1Q04638 464 aa3.36□□□□□ -1.87
CTF4YPR135W TY1A-BLQ12266 440 aa3.36□□□□□ -1.87
CTF4YPR135W DNF2Q12675 1612 aa3.33□□□□□ -1.88
CTF4YPR135W SPB4P25808 606 aaPredicted RBP3.33□□□□□ -1.88
CTF4YPR135W DLD1P32891 587 aa3.33□□□□□ -1.88
CTF4YPR135W AAD14P42884 376 aa3.33□□□□□ -1.88
CTF4YPR135W LSC2P53312 427 aa3.33□□□□□ -1.88
CTF4YPR135W HST2P53686 357 aa3.33□□□□□ -1.88
CTF4YPR135W ARG82P07250 355 aa3.32□□□□□ -1.88
CTF4YPR135W BUB1P41695 1021 aaKnown RBP RIP-Chip data3.32□□□□□ -1.88not detected
CTF4YPR135W YOR093CQ12275 1648 aa3.32□□□□□ -1.88
CTF4YPR135W MMP1Q12372 583 aa3.32□□□□□ -1.88
CTF4YPR135W TY1B-BRQ12193 1756 aa3.32□□□□□ -1.88
CTF4YPR135W TY1B-GR3Q12316 1755 aa3.32□□□□□ -1.88
CTF4YPR135W TY1B-ORQ92393 1755 aa3.32□□□□□ -1.88
CTF4YPR135W ESS1P22696 170 aa3.31□□□□□ -1.88
CTF4YPR135W YJR098CP47139 656 aa3.31□□□□□ -1.88
CTF4YPR135W APP1P53933 587 aa3.31□□□□□ -1.88
CTF4YPR135W SIN3P22579 1536 aa3.3□□□□□ -1.88
CTF4YPR135W VAC17P25591 423 aa3.3□□□□□ -1.88
CTF4YPR135W YBL086CP38177 466 aa3.3□□□□□ -1.88
CTF4YPR135W RTT106P40161 455 aa3.3□□□□□ -1.88
CTF4YPR135W UBP2Q01476 1272 aa3.3□□□□□ -1.88
CTF4YPR135W SAS10Q12136 610 aaPredicted RBP3.3□□□□□ -1.88
CTF4YPR135W TCB1Q12466 1186 aa3.3□□□□□ -1.88
CTF4YPR135W CHD1P32657 1468 aa3.3□□□□□ -1.88
CTF4YPR135W YJU3P28321 313 aa3.29□□□□□ -1.88
CTF4YPR135W SKI3P17883 1432 aaKnown RBP3.29□□□□□ -1.88
CTF4YPR135W UFD4P33202 1483 aa3.29□□□□□ -1.88
CTF4YPR135W GLN1P32288 370 aaKnown RBP3.29□□□□□ -1.88
CTF4YPR135W ROG3P43602 733 aa3.29□□□□□ -1.88
CTF4YPR135W YPR204WQ08995 1032 aa3.29□□□□□ -1.88
CTF4YPR135W ESP1Q03018 1630 aa3.28□□□□□ -1.88
CTF4YPR135W TY1A-MR1Q04215 440 aa3.28□□□□□ -1.89
CTF4YPR135W LSB3P43603 459 aaKnown RBP3.27□□□□□ -1.89
CTF4YPR135W PUS1Q12211 544 aaKnown RBP3.27□□□□□ -1.89
CTF4YPR135W TY2B-LR1P0C2J3 1770 aa3.27□□□□□ -1.89
CTF4YPR135W TY2B-FP0CX63 1770 aa3.27□□□□□ -1.89
CTF4YPR135W TY2B-GR2P0CX64 1770 aa3.27□□□□□ -1.89
CTF4YPR135W TY2B-CP25384 1770 aa3.27□□□□□ -1.89
CTF4YPR135W TY2B-DR2Q03494 1770 aa3.27□□□□□ -1.89
CTF4YPR135W TY1B-DR1Q03855 1755 aa3.27□□□□□ -1.89
CTF4YPR135W TY2B-DR3Q07791 1770 aaKnown RBP3.27□□□□□ -1.89
CTF4YPR135W TY2B-OR1Q12113 1770 aa3.27□□□□□ -1.89
CTF4YPR135W TY2B-DR1Q12472 1770 aa3.27□□□□□ -1.89
CTF4YPR135W TY2B-OR2Q12501 1770 aa3.27□□□□□ -1.89
CTF4YPR135W OSH7P38755 437 aa3.27□□□□□ -1.89
CTF4YPR135W ICP55P40051 511 aa3.27□□□□□ -1.89
CTF4YPR135W ATF2P53296 535 aa3.27□□□□□ -1.89
CTF4YPR135W RQC2Q12532 1038 aaKnown RBP3.27□□□□□ -1.89
CTF4YPR135W YRF1-1P0CX20 1796 aa3.26□□□□□ -1.89
CTF4YPR135W YRF1-5P0CX21 1796 aa3.26□□□□□ -1.89
CTF4YPR135W YRF1-8P0CX22 1796 aa3.26□□□□□ -1.89
CTF4YPR135W CCP1P00431 361 aa3.26□□□□□ -1.89
CTF4YPR135W EMW1P42842 904 aaKnown RBP3.26□□□□□ -1.89
CTF4YPR135W DFG5Q05031 458 aa3.26□□□□□ -1.89
CTF4YPR135W DRS2P39524 1355 aa3.25□□□□□ -1.89
CTF4YPR135W MDJ1P35191 511 aa3.25□□□□□ -1.89
CTF4YPR135W DPH6Q12429 685 aa3.25□□□□□ -1.89
CTF4YPR135W PAN1P32521 1480 aa3.25□□□□□ -1.89
CTF4YPR135W DMA1P38823 416 aa3.25□□□□□ -1.89
CTF4YPR135W SCC2Q04002 1493 aa3.24□□□□□ -1.89
CTF4YPR135W MKS1P34072 584 aa3.24□□□□□ -1.89
CTF4YPR135W RSC30P38781 883 aa3.24□□□□□ -1.89
CTF4YPR135W PKH3Q03306 898 aaPredicted RBP3.24□□□□□ -1.89
CTF4YPR135W TY1B-HO13535 1793 aa3.23□□□□□ -1.89
CTF4YPR135W TY1B-DR5P0C2I2 1755 aa3.23□□□□□ -1.89
CTF4YPR135W TY1B-DR6P0C2I3 1755 aa3.23□□□□□ -1.89
CTF4YPR135W TY1B-LR2P0C2I5 1755 aa3.23□□□□□ -1.89
CTF4YPR135W TY1B-LR3P0C2I6 1755 aaKnown RBP3.23□□□□□ -1.89
CTF4YPR135W TY1B-PR1P0C2I9 1755 aaKnown RBP3.23□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 8.3 ms