RNA–Protein interactions for RNA: YDR409W

SIZ1, Transcript of SUMO/Smt3 ligase, yeast

Gene SIZ1, Length 2,715 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIZ1	YDR409W	RTS3	P53289	263 aa		4.11	□□□□□ -1.75
SIZ1	YDR409W	MRX10	Q05648	414 aa		4.11	□□□□□ -1.75
SIZ1	YDR409W	RLP24	Q07915	199 aa	Known RBP	4.11	□□□□□ -1.75
SIZ1	YDR409W	SUP45	P12385	437 aa	Known RBP	4.1	□□□□□ -1.75
SIZ1	YDR409W	SSA4	P22202	642 aa	Known RBP	4.1	□□□□□ -1.75
SIZ1	YDR409W	YIR014W	P40570	242 aa		4.1	□□□□□ -1.75
SIZ1	YDR409W	TCB2	P48231	1178 aa		4.1	□□□□□ -1.75
SIZ1	YDR409W	HAT1	Q12341	374 aa		4.1	□□□□□ -1.75
SIZ1	YDR409W	MMS1	Q06211	1407 aa		4.1	□□□□□ -1.75
SIZ1	YDR409W	CDC3	P32457	520 aa	Known RBP	4.09	□□□□□ -1.75
SIZ1	YDR409W	GRX4	P32642	244 aa		4.09	□□□□□ -1.75
SIZ1	YDR409W	UBP14	P38237	781 aa	Known RBP	4.09	□□□□□ -1.75
SIZ1	YDR409W	REF2	P42073	533 aa	Predicted RBP	4.09	□□□□□ -1.75
SIZ1	YDR409W	NST1	P53935	1240 aa		4.09	□□□□□ -1.75
SIZ1	YDR409W	PDS5	Q04264	1277 aa		4.09	□□□□□ -1.75
SIZ1	YDR409W	RPP0	P05317	312 aa	Known RBP	4.09	□□□□□ -1.75
SIZ1	YDR409W	RDS2	P19541	446 aa	Known RBP	4.09	□□□□□ -1.75
SIZ1	YDR409W	RNH70	P53331	553 aa		4.09	□□□□□ -1.75
SIZ1	YDR409W	SPO14	P36126	1683 aa		4.09	□□□□□ -1.75
SIZ1	YDR409W	MRM1	P25270	412 aa		4.08	□□□□□ -1.76
SIZ1	YDR409W	MDJ2	P42834	146 aa		4.08	□□□□□ -1.76
SIZ1	YDR409W	YSP2	Q06681	1438 aa		4.08	□□□□□ -1.76
SIZ1	YDR409W	NMD2	P38798	1089 aa	Known RBP	4.08	□□□□□ -1.76
SIZ1	YDR409W	EAF7	P53911	425 aa	Known RBP	4.08	□□□□□ -1.76
SIZ1	YDR409W	BRE1	Q07457	700 aa	Known RBP	4.08	□□□□□ -1.76
SIZ1	YDR409W	CDC45	Q08032	650 aa		4.08	□□□□□ -1.76
SIZ1	YDR409W	TRM3	Q07527	1436 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	DNF2	Q12675	1612 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	RPA135	P22138	1203 aa	Known RBP	4.07	□□□□□ -1.76
SIZ1	YDR409W	PEP12	P32854	288 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	CDC27	P38042	758 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	SNF7	P39929	240 aa	Known RBP	4.07	□□□□□ -1.76
SIZ1	YDR409W	AAD16	Q02895	342 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	BUD3	P25558	1636 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	CHC1	P22137	1653 aa	Known RBP	4.07	□□□□□ -1.76
SIZ1	YDR409W	ASF1	P32447	279 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	FUN12	P39730	1002 aa	Known RBP	4.07	□□□□□ -1.76
SIZ1	YDR409W	RTF1	P53064	558 aa		4.07	□□□□□ -1.76
SIZ1	YDR409W	SUB1	P54000	292 aa	Known RBP	4.07	□□□□□ -1.76
SIZ1	YDR409W	DOP1	Q03921	1698 aa		4.06	□□□□□ -1.76
SIZ1	YDR409W	NFU1	P32860	256 aa		4.06	□□□□□ -1.76
SIZ1	YDR409W	ERP5	P38819	212 aa		4.06	□□□□□ -1.76
SIZ1	YDR409W	VPS27	P40343	622 aa	Known RBP	4.06	□□□□□ -1.76
SIZ1	YDR409W	NUP157	P40064	1391 aa	Known RBP	4.06	□□□□□ -1.76
SIZ1	YDR409W	TOM20	P35180	183 aa		4.06	□□□□□ -1.76
SIZ1	YDR409W	STS1	P38637	319 aa		4.06	□□□□□ -1.76
SIZ1	YDR409W	RAV1	P47104	1357 aa		4.06	□□□□□ -1.76
SIZ1	YDR409W	MSC6	Q08818	692 aa	Known RBP	4.06	□□□□□ -1.76
SIZ1	YDR409W	TSR3	Q12094	313 aa	Known RBP	4.06	□□□□□ -1.76
SIZ1	YDR409W	RVB2	Q12464	471 aa	Known RBP	4.06	□□□□□ -1.76
SIZ1	YDR409W	ALD3	P54114	506 aa		4.05	□□□□□ -1.76
SIZ1	YDR409W	FPR4	Q06205	392 aa	Predicted RBP	4.05	□□□□□ -1.76
SIZ1	YDR409W	PPM2	Q08282	695 aa		4.05	□□□□□ -1.76
SIZ1	YDR409W	DAL5	P15365	543 aa		4.05	□□□□□ -1.76
SIZ1	YDR409W	PAF1	P38351	445 aa		4.05	□□□□□ -1.76
SIZ1	YDR409W	YJR107W	P47145	328 aa		4.05	□□□□□ -1.76
SIZ1	YDR409W	TYW1	Q08960	810 aa	Known RBP	4.05	□□□□□ -1.76
SIZ1	YDR409W	RTC1	Q08281	1341 aa		4.04	□□□□□ -1.76
SIZ1	YDR409W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
SIZ1	YDR409W	ALG12	P53730	551 aa		4.04	□□□□□ -1.76
SIZ1	YDR409W	CSN12	P47130	423 aa		4.04	□□□□□ -1.76
SIZ1	YDR409W	YOL098C	Q12496	1037 aa		4.04	□□□□□ -1.76
SIZ1	YDR409W	ENO1	P00924	437 aa	Known RBP	4.03	□□□□□ -1.76
SIZ1	YDR409W	ROX1	P25042	368 aa		4.03	□□□□□ -1.76
SIZ1	YDR409W	RIM21	P48565	533 aa		4.03	□□□□□ -1.76
SIZ1	YDR409W	NUP192	P47054	1683 aa		4.03	□□□□□ -1.76
SIZ1	YDR409W	PDR11	P40550	1411 aa		4.03	□□□□□ -1.76
SIZ1	YDR409W	MET4	P32389	672 aa		4.03	□□□□□ -1.76
SIZ1	YDR409W	CDC11	P32458	415 aa		4.03	□□□□□ -1.76
SIZ1	YDR409W	YOL057W	Q08225	711 aa		4.03	□□□□□ -1.76
SIZ1	YDR409W	YDJ1	P25491	409 aa	Known RBP	4.02	□□□□□ -1.77
SIZ1	YDR409W	SEC8	P32855	1065 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	SLD2	P34252	453 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	BDF1	P35817	686 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	MTO1	P53070	669 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	YLR326W	Q06170	240 aa	Known RBP	4.02	□□□□□ -1.77
SIZ1	YDR409W	FRT1	Q99332	602 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	ENO2	P00925	437 aa	Known RBP	4.02	□□□□□ -1.77
SIZ1	YDR409W	GAL11	P19659	1081 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	RTG2	P32608	588 aa	Known RBP	4.02	□□□□□ -1.77
SIZ1	YDR409W	TOA1	P32773	286 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	RTG3	P38165	486 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	RSC30	P38781	883 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	FPR3	P38911	411 aa	Known RBP	4.02	□□□□□ -1.77
SIZ1	YDR409W	TPM2	P40414	161 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	EPS1	P40557	701 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	RPN4	Q03465	531 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	CWC15	Q03772	175 aa	Known RBP	4.02	□□□□□ -1.77
SIZ1	YDR409W	YBL113C	Q7M4S9	792 aa		4.02	□□□□□ -1.77
SIZ1	YDR409W	YNL108C	P53929	270 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	YPR204W	Q08995	1032 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	BNI1	P41832	1953 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	SNF2	P22082	1703 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	MAK16	P10962	306 aa	Predicted RBP	4.01	□□□□□ -1.77
SIZ1	YDR409W	TGL4	P36165	910 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	SVF1	Q05515	481 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	SSF2	Q12153	453 aa	Predicted RBP	4.01	□□□□□ -1.77
SIZ1	YDR409W	MNL2	Q12205	849 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	DRS2	P39524	1355 aa		4.01	□□□□□ -1.77
SIZ1	YDR409W	VMR1	P38735	1592 aa		4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms