RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C NOP8Q08287 484 aaPredicted RBP6.84□□□□□ -1.31
NPL4YBR170C TYW1Q08960 810 aaKnown RBP6.84□□□□□ -1.31
NPL4YBR170C SLY41P22215 453 aa6.83□□□□□ -1.32
NPL4YBR170C GLN1P32288 370 aaKnown RBP6.83□□□□□ -1.32
NPL4YBR170C GLY1P37303 387 aaKnown RBP6.83□□□□□ -1.32
NPL4YBR170C BIM1P40013 344 aa6.83□□□□□ -1.32
NPL4YBR170C RTT106P40161 455 aa6.83□□□□□ -1.32
NPL4YBR170C TBF1Q02457 562 aa6.82□□□□□ -1.32
NPL4YBR170C IXR1P33417 597 aa6.81□□□□□ -1.32
NPL4YBR170C NUP85P46673 744 aa6.81□□□□□ -1.32
NPL4YBR170C YJL007CP47080 104 aa6.81□□□□□ -1.32
NPL4YBR170C SLX8P40072 274 aa6.81□□□□□ -1.32
NPL4YBR170C SCW11P53189 542 aa6.81□□□□□ -1.32
NPL4YBR170C YMR196WQ04336 1088 aa6.81□□□□□ -1.32
NPL4YBR170C ATG32P40458 529 aa6.8□□□□□ -1.32
NPL4YBR170C RPA14P50106 137 aa6.8□□□□□ -1.32
NPL4YBR170C MIP1P15801 1254 aa6.79□□□□□ -1.32
NPL4YBR170C MRT4P33201 236 aaKnown RBP6.79□□□□□ -1.32
NPL4YBR170C PUS6P53294 404 aa6.79□□□□□ -1.32
NPL4YBR170C YPR097WQ06839 1073 aa6.79□□□□□ -1.32
NPL4YBR170C YDL206WQ12424 762 aa6.78□□□□□ -1.32
NPL4YBR170C KTR1P27810 393 aaKnown RBP6.77□□□□□ -1.33
NPL4YBR170C YIR007WP40566 764 aa6.77□□□□□ -1.33
NPL4YBR170C FPK1P53739 893 aa6.77□□□□□ -1.33
NPL4YBR170C HPF1Q05164 967 aa6.76□□□□□ -1.33
NPL4YBR170C TY1A-BLQ12266 440 aa6.75□□□□□ -1.33
NPL4YBR170C SSA4P22202 642 aaKnown RBP6.74□□□□□ -1.33
NPL4YBR170C TIF1P10081 395 aaKnown RBP6.73□□□□□ -1.33
NPL4YBR170C ARG82P07250 355 aa6.72□□□□□ -1.33
NPL4YBR170C LSC2P53312 427 aa6.72□□□□□ -1.33
NPL4YBR170C UBP2Q01476 1272 aa6.72□□□□□ -1.33
NPL4YBR170C YPR204WQ08995 1032 aa6.72□□□□□ -1.33
NPL4YBR170C RPL34BP40525 121 aaKnown RBP6.71□□□□□ -1.34
NPL4YBR170C BUB1P41695 1021 aaKnown RBP RIP-Chip data6.71□□□□□ -1.34not detected
NPL4YBR170C TRM1P15565 570 aaKnown RBP6.7□□□□□ -1.34
NPL4YBR170C YBL036CP38197 257 aa6.7□□□□□ -1.34
NPL4YBR170C CPS1P27614 576 aa6.68□□□□□ -1.34
NPL4YBR170C BIO2P32451 375 aa6.68□□□□□ -1.34
NPL4YBR170C AAD14P42884 376 aa6.67□□□□□ -1.34
NPL4YBR170C TTI1P36097 1038 aa6.67□□□□□ -1.34
NPL4YBR170C HST2P53686 357 aa6.67□□□□□ -1.34
NPL4YBR170C RTG2P32608 588 aaKnown RBP6.65□□□□□ -1.34
NPL4YBR170C ICP55P40051 511 aa6.65□□□□□ -1.34
NPL4YBR170C PUS1Q12211 544 aaKnown RBP6.65□□□□□ -1.34
NPL4YBR170C MMP1Q12372 583 aa6.64□□□□□ -1.35
NPL4YBR170C SCJ1P25303 377 aa6.64□□□□□ -1.35
NPL4YBR170C YBL086CP38177 466 aa6.64□□□□□ -1.35
NPL4YBR170C NOB1Q08444 459 aaKnown RBP6.64□□□□□ -1.35
NPL4YBR170C RAD59Q12223 238 aa6.64□□□□□ -1.35
NPL4YBR170C DPH6Q12429 685 aa6.64□□□□□ -1.35
NPL4YBR170C VAC17P25591 423 aa6.63□□□□□ -1.35
NPL4YBR170C CSE4P36012 229 aa6.63□□□□□ -1.35
NPL4YBR170C YNL108CP53929 270 aa6.63□□□□□ -1.35
NPL4YBR170C YJR098CP47139 656 aa6.62□□□□□ -1.35
NPL4YBR170C RPL34AP87262 121 aaPredicted RBP6.62□□□□□ -1.35
NPL4YBR170C PKH3Q03306 898 aaPredicted RBP6.62□□□□□ -1.35
NPL4YBR170C MRX12P47084 519 aa6.62□□□□□ -1.35
NPL4YBR170C TCB1Q12466 1186 aa6.62□□□□□ -1.35
NPL4YBR170C AIM44Q99299 758 aa6.62□□□□□ -1.35
NPL4YBR170C ESS1P22696 170 aa6.61□□□□□ -1.35
NPL4YBR170C DLD1P32891 587 aa6.61□□□□□ -1.35
NPL4YBR170C ROG3P43602 733 aa6.61□□□□□ -1.35
NPL4YBR170C SUP45P12385 437 aaKnown RBP6.6□□□□□ -1.35
NPL4YBR170C SLD2P34252 453 aa6.6□□□□□ -1.35
NPL4YBR170C ORC1P54784 914 aaPredicted RBP6.6□□□□□ -1.35
NPL4YBR170C CDC3P32457 520 aaKnown RBP6.59□□□□□ -1.35
NPL4YBR170C OSH7P38755 437 aa6.59□□□□□ -1.36
NPL4YBR170C TY1A-MR1Q04215 440 aa6.59□□□□□ -1.36
NPL4YBR170C PHM7Q12252 991 aa6.59□□□□□ -1.36
NPL4YBR170C YJU3P28321 313 aa6.58□□□□□ -1.36
NPL4YBR170C LSB3P43603 459 aaKnown RBP6.58□□□□□ -1.36
NPL4YBR170C LYS5P50113 272 aa6.57□□□□□ -1.36
NPL4YBR170C PUP1P25043 261 aa6.56□□□□□ -1.36
NPL4YBR170C APP1P53933 587 aa6.56□□□□□ -1.36
NPL4YBR170C YML083CQ04526 418 aa6.56□□□□□ -1.36
NPL4YBR170C SSF1P38789 453 aaPredicted RBP6.56□□□□□ -1.36
NPL4YBR170C ENO1P00924 437 aaKnown RBP6.55□□□□□ -1.36
NPL4YBR170C ENO2P00925 437 aaKnown RBP6.55□□□□□ -1.36
NPL4YBR170C ARG8P18544 423 aa6.55□□□□□ -1.36
NPL4YBR170C EMW1P42842 904 aaKnown RBP6.55□□□□□ -1.36
NPL4YBR170C YDJ1P25491 409 aaKnown RBP6.54□□□□□ -1.36
NPL4YBR170C SIS2P36024 562 aa6.54□□□□□ -1.36
NPL4YBR170C MRX10Q05648 414 aa6.54□□□□□ -1.36
NPL4YBR170C SPT5P27692 1063 aaKnown RBP6.53□□□□□ -1.36
NPL4YBR170C NOP7P53261 605 aaKnown RBP6.53□□□□□ -1.36
NPL4YBR170C RSC30P38781 883 aa6.53□□□□□ -1.36
NPL4YBR170C SEN54Q02825 467 aaPredicted RBP6.53□□□□□ -1.36
NPL4YBR170C CCP1P00431 361 aa6.51□□□□□ -1.37
NPL4YBR170C MAK16P10962 306 aaPredicted RBP6.51□□□□□ -1.37
NPL4YBR170C RIM21P48565 533 aa6.51□□□□□ -1.37
NPL4YBR170C SNU71P53207 620 aaKnown RBP6.51□□□□□ -1.37
NPL4YBR170C MKS1P34072 584 aa6.5□□□□□ -1.37
NPL4YBR170C HAT1Q12341 374 aa6.5□□□□□ -1.37
NPL4YBR170C HEM3P28789 327 aa6.5□□□□□ -1.37
NPL4YBR170C TGL4P36165 910 aa6.5□□□□□ -1.37
NPL4YBR170C JJJ3P47138 172 aa6.5□□□□□ -1.37
NPL4YBR170C ITT1Q04638 464 aa6.5□□□□□ -1.37
NPL4YBR170C NSG2P53898 299 aa6.47□□□□□ -1.37
NPL4YBR170C DFG5Q05031 458 aa6.47□□□□□ -1.37
NPL4YBR170C MDJ1P35191 511 aa6.47□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 24.1 ms