RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W ALD3P54114 506 aa8.06□□□□□ -1.12
SHP1YBL058W ORC1P54784 914 aaPredicted RBP8.06□□□□□ -1.12
SHP1YBL058W MEC3Q02574 474 aa8.06□□□□□ -1.12
SHP1YBL058W RIM15P43565 1770 aa8.05□□□□□ -1.12
SHP1YBL058W SSP1P38871 571 aa8.05□□□□□ -1.12
SHP1YBL058W DMA1P38823 416 aa8.04□□□□□ -1.12
SHP1YBL058W ADE16P54113 591 aaKnown RBP8.03□□□□□ -1.12
SHP1YBL058W SIR4P11978 1358 aa8.02□□□□□ -1.13
SHP1YBL058W DPS1P04802 557 aaKnown RBP8.02□□□□□ -1.13
SHP1YBL058W RCR1P38212 213 aa8.02□□□□□ -1.13
SHP1YBL058W RRD1P40454 393 aaKnown RBP8.02□□□□□ -1.13
SHP1YBL058W GAS4Q08271 471 aa8.02□□□□□ -1.13
SHP1YBL058W MSB4Q12317 492 aa8.02□□□□□ -1.13
SHP1YBL058W MLP1Q02455 1875 aaKnown RBP8□□□□□ -1.13
SHP1YBL058W EAF6P47128 113 aa8□□□□□ -1.13
SHP1YBL058W RPO41P13433 1351 aaKnown RBP7.99□□□□□ -1.13
SHP1YBL058W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.99□□□□□ -1.13not detected
SHP1YBL058W SAP155P43612 1002 aa7.98□□□□□ -1.13
SHP1YBL058W UTP22P53254 1237 aaPredicted RBP7.98□□□□□ -1.13
SHP1YBL058W BUG1Q12191 341 aa7.98□□□□□ -1.13
SHP1YBL058W RAD4P14736 754 aa7.97□□□□□ -1.13
SHP1YBL058W TOS1P38288 455 aa7.97□□□□□ -1.13
SHP1YBL058W PDI1P17967 522 aaKnown RBP7.95□□□□□ -1.14
SHP1YBL058W OXP1P28273 1286 aa7.95□□□□□ -1.14
SHP1YBL058W RTF1P53064 558 aa7.95□□□□□ -1.14
SHP1YBL058W ATG13Q06628 738 aa7.95□□□□□ -1.14
SHP1YBL058W GRE2Q12068 342 aaKnown RBP7.94□□□□□ -1.14
SHP1YBL058W CTT1P06115 562 aa7.93□□□□□ -1.14
SHP1YBL058W GRX1P25373 110 aaKnown RBP7.93□□□□□ -1.14
SHP1YBL058W FKH1P40466 484 aa7.93□□□□□ -1.14
SHP1YBL058W AUS1Q08409 1394 aa7.93□□□□□ -1.14
SHP1YBL058W MSN5P52918 1224 aa7.92□□□□□ -1.14
SHP1YBL058W GRX4P32642 244 aa7.91□□□□□ -1.14
SHP1YBL058W BCH2P36122 765 aa7.91□□□□□ -1.14
SHP1YBL058W HPC2Q01448 625 aa7.91□□□□□ -1.14
SHP1YBL058W MHP1P43638 1398 aa7.91□□□□□ -1.14
SHP1YBL058W OSM1P21375 501 aaKnown RBP7.9□□□□□ -1.14
SHP1YBL058W YKL222CP35995 705 aa7.9□□□□□ -1.14
SHP1YBL058W RTG3P38165 486 aa7.9□□□□□ -1.14
SHP1YBL058W TAP42Q04372 366 aa7.9□□□□□ -1.14
SHP1YBL058W RIX7Q07844 837 aaKnown RBP7.9□□□□□ -1.14
SHP1YBL058W INP54Q08227 384 aaKnown RBP7.9□□□□□ -1.14
SHP1YBL058W SEC3P33332 1336 aaKnown RBP7.89□□□□□ -1.15
SHP1YBL058W MST1P07236 462 aa7.89□□□□□ -1.15
SHP1YBL058W HIM1Q06674 414 aa7.89□□□□□ -1.15
SHP1YBL058W YBL029C-AQ3E756 94 aa7.89□□□□□ -1.15
SHP1YBL058W ERT1P38140 529 aa7.88□□□□□ -1.15
SHP1YBL058W YER156CP40093 338 aaKnown RBP7.88□□□□□ -1.15
SHP1YBL058W RRT14P40470 206 aa7.88□□□□□ -1.15
SHP1YBL058W PEX21P50091 288 aa7.88□□□□□ -1.15
SHP1YBL058W SQS1P53866 767 aaKnown RBP7.87□□□□□ -1.15
SHP1YBL058W KIN4Q01919 800 aa7.87□□□□□ -1.15
SHP1YBL058W TUM1Q08686 304 aaKnown RBP7.86□□□□□ -1.15
SHP1YBL058W SSA4P22202 642 aaKnown RBP7.85□□□□□ -1.15
SHP1YBL058W CWH41P53008 833 aa7.85□□□□□ -1.15
SHP1YBL058W YBP2P53169 641 aa7.85□□□□□ -1.15
SHP1YBL058W PUS5Q06244 254 aa7.84□□□□□ -1.15
SHP1YBL058W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.83□□□□□ -1.16not detected
SHP1YBL058W FPK1P53739 893 aa7.83□□□□□ -1.16
SHP1YBL058W RPS9BP05755 195 aaKnown RBP7.82□□□□□ -1.16
SHP1YBL058W NST1P53935 1240 aa7.82□□□□□ -1.16
SHP1YBL058W CTF4Q01454 927 aa7.82□□□□□ -1.16
SHP1YBL058W YLR271WQ06152 274 aa7.82□□□□□ -1.16
SHP1YBL058W CTI6Q08923 506 aa7.82□□□□□ -1.16
SHP1YBL058W NUP145P49687 1317 aa7.81□□□□□ -1.16
SHP1YBL058W RSM7P47150 247 aa7.8□□□□□ -1.16
SHP1YBL058W NYV1Q12255 253 aa7.8□□□□□ -1.16
SHP1YBL058W HSP104P31539 908 aaKnown RBP7.79□□□□□ -1.16
SHP1YBL058W PFF1P38244 976 aa7.79□□□□□ -1.16
SHP1YBL058W BUD27P43573 796 aaKnown RBP RIP-Chip data7.78□□□□□ -1.16not detected
SHP1YBL058W DSD1P53095 428 aa7.78□□□□□ -1.16
SHP1YBL058W UTP10P42945 1769 aaKnown RBP7.77□□□□□ -1.17
SHP1YBL058W KAR2P16474 682 aaKnown RBP7.77□□□□□ -1.17
SHP1YBL058W VNX1P42839 908 aa7.77□□□□□ -1.17
SHP1YBL058W MDG1P53885 366 aa7.77□□□□□ -1.17
SHP1YBL058W TOM1Q03280 3268 aa7.76□□□□□ -1.17
SHP1YBL058W SMY1P32364 656 aaKnown RBP7.76□□□□□ -1.17
SHP1YBL058W TEA1P47988 759 aa7.76□□□□□ -1.17
SHP1YBL058W TOP1P04786 769 aa7.75□□□□□ -1.17
SHP1YBL058W RMT2Q03305 412 aa7.74□□□□□ -1.17
SHP1YBL058W LPD1P09624 499 aaKnown RBP7.73□□□□□ -1.17
SHP1YBL058W SLI15P38283 698 aa7.73□□□□□ -1.17
SHP1YBL058W MGA2P40578 1113 aa7.73□□□□□ -1.17
SHP1YBL058W AIR2Q12476 344 aaKnown RBP7.73□□□□□ -1.17
SHP1YBL058W FAS2P19097 1887 aaKnown RBP7.72□□□□□ -1.17
SHP1YBL058W ICL1P28240 557 aaPredicted RBP7.72□□□□□ -1.17
SHP1YBL058W SER1P33330 395 aaKnown RBP7.72□□□□□ -1.17
SHP1YBL058W AKL1P38080 1108 aaKnown RBP7.72□□□□□ -1.17
SHP1YBL058W PAP2P53632 584 aaKnown RBP7.72□□□□□ -1.17
SHP1YBL058W RAT1Q02792 1006 aaKnown RBP7.72□□□□□ -1.17
SHP1YBL058W ERO1Q03103 563 aa7.72□□□□□ -1.17
SHP1YBL058W PDS5Q04264 1277 aa7.72□□□□□ -1.17
SHP1YBL058W ALE1Q08548 619 aa7.72□□□□□ -1.17
SHP1YBL058W PHM7Q12252 991 aa7.72□□□□□ -1.17
SHP1YBL058W THS1P04801 734 aaKnown RBP7.71□□□□□ -1.18
SHP1YBL058W RET1P22276 1149 aaKnown RBP7.71□□□□□ -1.18
SHP1YBL058W SHC1P39000 512 aa7.71□□□□□ -1.18
SHP1YBL058W DIB1Q06819 143 aaPredicted RBP7.71□□□□□ -1.18
SHP1YBL058W ATG20Q07528 640 aa7.71□□□□□ -1.18
SHP1YBL058W NOP53Q12080 455 aaKnown RBP7.71□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms