RNA–Protein interactions for RNA: ENST00000591877.1

VMP1-213, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 791 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-213ENST00000591877 HS6ST3Q8IZP7 471 aa13.79□□□□□ -0.2
VMP1-213ENST00000591877 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
VMP1-213ENST00000591877 PTCD2Q8WV60 388 aaKnown RBP13.77□□□□□ -0.21
VMP1-213ENST00000591877 STAC3Q96MF2 364 aa13.75□□□□□ -0.21
VMP1-213ENST00000591877 PPP4R3BQ5MIZ7 849 aa13.73□□□□□ -0.21
VMP1-213ENST00000591877 PLPP6Q8IY26 295 aa13.73□□□□□ -0.21
VMP1-213ENST00000591877 TSHZ2Q9NRE2 1034 aa13.72□□□□□ -0.21
VMP1-213ENST00000591877 URB2Q14146 1524 aaKnown RBP13.72□□□□□ -0.21
VMP1-213ENST00000591877 FOXK1P85037 733 aa13.7□□□□□ -0.22
VMP1-213ENST00000591877 PTPN5P54829 565 aa13.69□□□□□ -0.22
VMP1-213ENST00000591877 KCNK17Q96T54 332 aa13.69□□□□□ -0.22
VMP1-213ENST00000591877 TBC1D12O60347 775 aa13.65□□□□□ -0.22
VMP1-213ENST00000591877 DSG2Q14126 1118 aa13.65□□□□□ -0.22
VMP1-213ENST00000591877 PRKCSHP14314 528 aaPredicted RBP13.64□□□□□ -0.23
VMP1-213ENST00000591877 GPHNQ9NQX3 736 aaPredicted RBP13.64□□□□□ -0.23
VMP1-213ENST00000591877 KCNH8Q96L42 1107 aa13.62□□□□□ -0.23
VMP1-213ENST00000591877 VPS9D1Q9Y2B5 631 aa13.62□□□□□ -0.23
VMP1-213ENST00000591877 TOPBP1Q92547 1522 aa13.59□□□□□ -0.23
VMP1-213ENST00000591877 TPRNQ4KMQ1 711 aa13.56□□□□□ -0.24
VMP1-213ENST00000591877 DNMBPQ6XZF7 1577 aa13.55□□□□□ -0.24
VMP1-213ENST00000591877 ZNF454Q8N9F8 522 aa13.55□□□□□ -0.24
VMP1-213ENST00000591877 UPF1Q92900 1129 aaKnown RBP eCLIP13.55□□□□□ -0.24
VMP1-213ENST00000591877 IFT140Q96RY7 1462 aa13.53□□□□□ -0.24
VMP1-213ENST00000591877 ZNF608Q9ULD9 1512 aaPredicted RBP13.53□□□□□ -0.24
VMP1-213ENST00000591877 ABCC8Q09428 1581 aa13.53□□□□□ -0.24
VMP1-213ENST00000591877 THSD4Q6ZMP0 1018 aa13.51□□□□□ -0.25
VMP1-213ENST00000591877 IRX2Q9BZI1 471 aaPredicted RBP13.51□□□□□ -0.25
VMP1-213ENST00000591877 NBR1Q14596 966 aa13.5□□□□□ -0.25
VMP1-213ENST00000591877 NKX1-1Q15270 411 aaPredicted RBP13.5□□□□□ -0.25
VMP1-213ENST00000591877 OXER1Q8TDS5 423 aa13.5□□□□□ -0.25
VMP1-213ENST00000591877 RGS20O76081 388 aa13.49□□□□□ -0.25
VMP1-213ENST00000591877 BCL2L12Q9HB09 334 aa13.49□□□□□ -0.25
VMP1-213ENST00000591877 TARBP1Q13395 1621 aaKnown RBP13.49□□□□□ -0.25
VMP1-213ENST00000591877 GOLGA8CPA6NN73 597 aa13.48□□□□□ -0.25
VMP1-213ENST00000591877 BHMG1C9JSJ3 638 aaPredicted RBP13.48□□□□□ -0.25
VMP1-213ENST00000591877 SUPT5HO00267 1087 aaKnown RBP13.48□□□□□ -0.25
VMP1-213ENST00000591877 GTPBP6O43824 516 aaPredicted RBP13.48□□□□□ -0.25
VMP1-213ENST00000591877 IFFO2Q5TF58 517 aa13.48□□□□□ -0.25
VMP1-213ENST00000591877 RYDENQ9NUL5 291 aaKnown RBP13.48□□□□□ -0.25
VMP1-213ENST00000591877 WNT2BQ93097 391 aa13.47□□□□□ -0.25
VMP1-213ENST00000591877 SLC4A5Q9BY07 1137 aa13.47□□□□□ -0.25
VMP1-213ENST00000591877 EIF4G3O43432 1585 aaKnown RBP13.46□□□□□ -0.25
VMP1-213ENST00000591877 A0A0G2JS52 829 aa13.46□□□□□ -0.25
VMP1-213ENST00000591877 POLA1P09884 1462 aaPredicted RBP13.46□□□□□ -0.25
VMP1-213ENST00000591877 PTPREP23469 700 aa13.44□□□□□ -0.26
VMP1-213ENST00000591877 FOSBP53539 338 aa13.43□□□□□ -0.26
VMP1-213ENST00000591877 MRPL50Q8N5N7 158 aaKnown RBP13.43□□□□□ -0.26
VMP1-213ENST00000591877 ZBED2Q9BTP6 218 aa13.43□□□□□ -0.26
VMP1-213ENST00000591877 CUX1P39880 1505 aa13.42□□□□□ -0.26
VMP1-213ENST00000591877 RAD54L2Q9Y4B4 1467 aa13.42□□□□□ -0.26
VMP1-213ENST00000591877 AQRO60306 1485 aaKnown RBP eCLIP13.41□□□□□ -0.267e-21■■■■□ 23.2
VMP1-213ENST00000591877 FGD5Q6ZNL6 1462 aa13.39□□□□□ -0.27
VMP1-213ENST00000591877 SOGA1O94964 1423 aa13.38□□□□□ -0.27
VMP1-213ENST00000591877 PPP1R15BQ5SWA1 713 aa13.37□□□□□ -0.27
VMP1-213ENST00000591877 CHD1O14646 1710 aa13.36□□□□□ -0.27
VMP1-213ENST00000591877 CRISPLD2Q9H0B8 497 aa13.36□□□□□ -0.27
VMP1-213ENST00000591877 ADAM33Q9BZ11 813 aa13.35□□□□□ -0.27
VMP1-213ENST00000591877 TDRD9Q8NDG6 1382 aaKnown RBP13.34□□□□□ -0.27
VMP1-213ENST00000591877 WDR97A6NE52 1622 aa13.34□□□□□ -0.27
VMP1-213ENST00000591877 ZDHHC16Q969W1 377 aa13.33□□□□□ -0.28
VMP1-213ENST00000591877 JPH4Q96JJ6 628 aa13.33□□□□□ -0.28
VMP1-213ENST00000591877 NBPF3Q9H094 633 aa13.33□□□□□ -0.28
VMP1-213ENST00000591877 EVI5O60447 810 aa13.32□□□□□ -0.28
VMP1-213ENST00000591877 ANO8Q9HCE9 1232 aaPredicted RBP13.32□□□□□ -0.28
VMP1-213ENST00000591877 RIMBP3CA6NJZ7 1639 aa13.31□□□□□ -0.28
VMP1-213ENST00000591877 RIMBP3BA6NNM3 1639 aa13.31□□□□□ -0.28
VMP1-213ENST00000591877 RIMBP3Q9UFD9 1639 aa13.31□□□□□ -0.28
VMP1-213ENST00000591877 NCKAP5LQ9HCH0 1330 aa13.27□□□□□ -0.29
VMP1-213ENST00000591877 SNAPC4Q5SXM2 1469 aa13.27□□□□□ -0.29
VMP1-213ENST00000591877 PBRM1Q86U86 1689 aa13.26□□□□□ -0.29
VMP1-213ENST00000591877 BIVM-ERCC5R4GMW8 1640 aa13.26□□□□□ -0.29
VMP1-213ENST00000591877 ARHGEF11O15085 1522 aa13.25□□□□□ -0.29
VMP1-213ENST00000591877 PROX2Q3B8N5 592 aa13.25□□□□□ -0.29
VMP1-213ENST00000591877 TOP2BQ02880 1626 aa13.24□□□□□ -0.29
VMP1-213ENST00000591877 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
VMP1-213ENST00000591877 ABCA10Q8WWZ4 1543 aa13.24□□□□□ -0.29
VMP1-213ENST00000591877 GRIN2BQ13224 1484 aa13.24□□□□□ -0.29
VMP1-213ENST00000591877 PDE4AP27815 886 aa13.24□□□□□ -0.29
VMP1-213ENST00000591877 ABCA5Q8WWZ7 1642 aa13.24□□□□□ -0.29
VMP1-213ENST00000591877 BCAMP50895 628 aa13.23□□□□□ -0.29
VMP1-213ENST00000591877 Q6ZNB5 142 aa13.23□□□□□ -0.29
VMP1-213ENST00000591877 ANKK1Q8NFD2 765 aa13.23□□□□□ -0.29
VMP1-213ENST00000591877 GAPVD1Q14C86 1478 aa13.23□□□□□ -0.29
VMP1-213ENST00000591877 MAGI1Q96QZ7 1491 aaPredicted RBP13.23□□□□□ -0.29
VMP1-213ENST00000591877 ITGBL1O95965 494 aaPredicted RBP13.22□□□□□ -0.29
VMP1-213ENST00000591877 P3H3Q8IVL6 736 aa13.22□□□□□ -0.29
VMP1-213ENST00000591877 WRNQ14191 1432 aaPredicted RBP eCLIP13.22□□□□□ -0.29
VMP1-213ENST00000591877 RABGEF1Q9UJ41 708 aa13.21□□□□□ -0.29
VMP1-213ENST00000591877 PPP1R3GB7ZBB8 358 aa13.2□□□□□ -0.3
VMP1-213ENST00000591877 MAP3K9P80192 1104 aa13.2□□□□□ -0.3
VMP1-213ENST00000591877 COL9A1P20849 921 aa13.19□□□□□ -0.3
VMP1-213ENST00000591877 CLASP1Q7Z460 1538 aa13.18□□□□□ -0.3
VMP1-213ENST00000591877 SYNJ2O15056 1496 aa13.18□□□□□ -0.3
VMP1-213ENST00000591877 LARP6Q9BRS8 491 aaKnown RBP13.18□□□□□ -0.3
VMP1-213ENST00000591877 PCDHGA10Q9Y5H3 936 aa13.18□□□□□ -0.3
VMP1-213ENST00000591877 CHMP7Q8WUX9 453 aaPredicted RBP13.17□□□□□ -0.3
VMP1-213ENST00000591877 SOWAHBA6NEL2 793 aa13.15□□□□□ -0.3
VMP1-213ENST00000591877 DDX27Q96GQ7 796 aaKnown RBP13.14□□□□□ -0.31
VMP1-213ENST00000591877 ARAP1Q96P48 1450 aa13.14□□□□□ -0.31
VMP1-213ENST00000591877 CYB5RLQ6IPT4 315 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms