RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 UPF1Q92900 1129 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS13D-206ENST00000476045 ARIH1Q9Y4X5 557 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-206ENST00000476045 URB2Q14146 1524 aaKnown RBP7.72□□□□□ -1.17
VPS13D-206ENST00000476045 ABCC8Q09428 1581 aa7.71□□□□□ -1.17
VPS13D-206ENST00000476045 FOSBP53539 338 aa7.71□□□□□ -1.18
VPS13D-206ENST00000476045 LSM11P83369 360 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS13D-206ENST00000476045 JPH4Q96JJ6 628 aa7.71□□□□□ -1.18
VPS13D-206ENST00000476045 PTGER2P43116 358 aa7.7□□□□□ -1.18
VPS13D-206ENST00000476045 PPP4R3BQ5MIZ7 849 aa7.7□□□□□ -1.18
VPS13D-206ENST00000476045 CFAP44Q96MT7 982 aa7.7□□□□□ -1.18
VPS13D-206ENST00000476045 DNMBPQ6XZF7 1577 aa7.7□□□□□ -1.18
VPS13D-206ENST00000476045 CCDC88BA6NC98 1476 aa7.69□□□□□ -1.18
VPS13D-206ENST00000476045 EVI5O60447 810 aa7.69□□□□□ -1.18
VPS13D-206ENST00000476045 WDR97A6NE52 1622 aa7.69□□□□□ -1.18
VPS13D-206ENST00000476045 IFT140Q96RY7 1462 aa7.68□□□□□ -1.18
VPS13D-206ENST00000476045 ARHGAP33O14559 1287 aa7.68□□□□□ -1.18
VPS13D-206ENST00000476045 BCL2L12Q9HB09 334 aa7.68□□□□□ -1.18
VPS13D-206ENST00000476045 TOPBP1Q92547 1522 aa7.67□□□□□ -1.18
VPS13D-206ENST00000476045 TK2O00142 265 aa7.66□□□□□ -1.18
VPS13D-206ENST00000476045 PDIA6Q15084 440 aa7.66□□□□□ -1.18
VPS13D-206ENST00000476045 EIF4G3O43432 1585 aaKnown RBP7.66□□□□□ -1.18
VPS13D-206ENST00000476045 MAP3K9P80192 1104 aa7.65□□□□□ -1.18
VPS13D-206ENST00000476045 DPYSL4O14531 572 aa7.64□□□□□ -1.19
VPS13D-206ENST00000476045 ZNF454Q8N9F8 522 aa7.64□□□□□ -1.19
VPS13D-206ENST00000476045 SLC4A5Q9BY07 1137 aa7.64□□□□□ -1.19
VPS13D-206ENST00000476045 PHF14O94880 888 aa7.63□□□□□ -1.19
VPS13D-206ENST00000476045 E2F4Q16254 413 aa7.63□□□□□ -1.19
VPS13D-206ENST00000476045 AXIN2Q9Y2T1 843 aa7.63□□□□□ -1.19
VPS13D-206ENST00000476045 TARBP1Q13395 1621 aaKnown RBP7.63□□□□□ -1.19
VPS13D-206ENST00000476045 HRO43593 1189 aa7.62□□□□□ -1.19
VPS13D-206ENST00000476045 DMRTA1Q5VZB9 504 aa7.62□□□□□ -1.19
VPS13D-206ENST00000476045 ZDHHC16Q969W1 377 aa7.62□□□□□ -1.19
VPS13D-206ENST00000476045 TSHZ2Q9NRE2 1034 aa7.62□□□□□ -1.19
VPS13D-206ENST00000476045 PCDHGA10Q9Y5H3 936 aa7.62□□□□□ -1.19
VPS13D-206ENST00000476045 SPDYE16A6NNV3 312 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-206ENST00000476045 PSEN2P49810 448 aa7.61□□□□□ -1.19
VPS13D-206ENST00000476045 PLCB2Q00722 1185 aa7.61□□□□□ -1.19
VPS13D-206ENST00000476045 ADGRD1Q6QNK2 874 aa7.61□□□□□ -1.19
VPS13D-206ENST00000476045 FBXW7Q969H0 707 aa7.6□□□□□ -1.19
VPS13D-206ENST00000476045 ADAM33Q9BZ11 813 aa7.6□□□□□ -1.19
VPS13D-206ENST00000476045 MYT1LQ9UL68 1186 aa7.6□□□□□ -1.19
VPS13D-206ENST00000476045 CHD1O14646 1710 aa7.6□□□□□ -1.19
VPS13D-206ENST00000476045 TYW1BQ6NUM6 668 aa7.59□□□□□ -1.19
VPS13D-206ENST00000476045 RNF166Q96A37 237 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-206ENST00000476045 EPAS1Q99814 870 aa7.59□□□□□ -1.19
VPS13D-206ENST00000476045 POLA1P09884 1462 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-206ENST00000476045 ANKRD13DQ6ZTN6 518 aa7.58□□□□□ -1.2
VPS13D-206ENST00000476045 KCNK17Q96T54 332 aa7.58□□□□□ -1.2
VPS13D-206ENST00000476045 ZNF608Q9ULD9 1512 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-206ENST00000476045 PPP1R3GB7ZBB8 358 aa7.57□□□□□ -1.2
VPS13D-206ENST00000476045 PTPREP23469 700 aa7.57□□□□□ -1.2
VPS13D-206ENST00000476045 ZBED2Q9BTP6 218 aa7.57□□□□□ -1.2
VPS13D-206ENST00000476045 VPS9D1Q9Y2B5 631 aa7.57□□□□□ -1.2
VPS13D-206ENST00000476045 SLC24A1O60721 1099 aa7.56□□□□□ -1.2
VPS13D-206ENST00000476045 KCNH8Q96L42 1107 aa7.56□□□□□ -1.2
VPS13D-206ENST00000476045 WDR70Q9NW82 654 aa7.56□□□□□ -1.2
VPS13D-206ENST00000476045 PBRM1Q86U86 1689 aa7.55□□□□□ -1.2
VPS13D-206ENST00000476045 BHMG1C9JSJ3 638 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-206ENST00000476045 RIMBP3CA6NJZ7 1639 aa7.55□□□□□ -1.2
VPS13D-206ENST00000476045 RIMBP3BA6NNM3 1639 aa7.55□□□□□ -1.2
VPS13D-206ENST00000476045 RIMBP3Q9UFD9 1639 aa7.55□□□□□ -1.2
VPS13D-206ENST00000476045 FGD5Q6ZNL6 1462 aa7.54□□□□□ -1.2
VPS13D-206ENST00000476045 MAGI1Q96QZ7 1491 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-206ENST00000476045 CUX1P39880 1505 aa7.53□□□□□ -1.2
VPS13D-206ENST00000476045 EN1Q05925 392 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-206ENST00000476045 KCNV2Q8TDN2 545 aa7.53□□□□□ -1.2
VPS13D-206ENST00000476045 ARHGEF1Q92888 912 aaKnown RBP7.53□□□□□ -1.2
VPS13D-206ENST00000476045 ARHGEF11O15085 1522 aa7.52□□□□□ -1.2
VPS13D-206ENST00000476045 ABCA5Q8WWZ7 1642 aa7.52□□□□□ -1.2
VPS13D-206ENST00000476045 BIVM-ERCC5R4GMW8 1640 aa7.52□□□□□ -1.2
VPS13D-206ENST00000476045 SYNJ1O43426 1573 aa7.52□□□□□ -1.21
VPS13D-206ENST00000476045 ONECUT3O60422 494 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-206ENST00000476045 COL9A1P20849 921 aa7.51□□□□□ -1.21
VPS13D-206ENST00000476045 PRIM1P49642 420 aaKnown RBP7.5□□□□□ -1.21
VPS13D-206ENST00000476045 C6orf132Q5T0Z8 1188 aa7.5□□□□□ -1.21
VPS13D-206ENST00000476045 DDX12PQ92771 950 aa7.5□□□□□ -1.21
VPS13D-206ENST00000476045 CLASP1Q7Z460 1538 aa7.5□□□□□ -1.21
VPS13D-206ENST00000476045 GRIN2BQ13224 1484 aa7.49□□□□□ -1.21
VPS13D-206ENST00000476045 TOP2BQ02880 1626 aa7.49□□□□□ -1.21
VPS13D-206ENST00000476045 ABCA10Q8WWZ4 1543 aa7.49□□□□□ -1.21
VPS13D-206ENST00000476045 P3H3Q8IVL6 736 aa7.49□□□□□ -1.21
VPS13D-206ENST00000476045 SNAPC4Q5SXM2 1469 aa7.49□□□□□ -1.21
VPS13D-206ENST00000476045 SOGA1O94964 1423 aa7.48□□□□□ -1.21
VPS13D-206ENST00000476045 OSBPP22059 807 aa7.48□□□□□ -1.21
VPS13D-206ENST00000476045 NBR1Q14596 966 aa7.48□□□□□ -1.21
VPS13D-206ENST00000476045 RABGEF1Q9UJ41 708 aa7.48□□□□□ -1.21
VPS13D-206ENST00000476045 SYNJ2O15056 1496 aa7.48□□□□□ -1.21
VPS13D-206ENST00000476045 AQRO60306 1485 aaKnown RBP eCLIP7.47□□□□□ -1.212e-6■■■■□ 22.3
VPS13D-206ENST00000476045 RAD54L2Q9Y4B4 1467 aa7.47□□□□□ -1.21
VPS13D-206ENST00000476045 ADAMTS12P58397 1594 aa7.46□□□□□ -1.21
VPS13D-206ENST00000476045 GAPVD1Q14C86 1478 aa7.45□□□□□ -1.22
VPS13D-206ENST00000476045 TSR1Q2NL82 804 aaKnown RBP7.45□□□□□ -1.22
VPS13D-206ENST00000476045 PROX2Q3B8N5 592 aa7.45□□□□□ -1.22
VPS13D-206ENST00000476045 NBPF3Q9H094 633 aa7.45□□□□□ -1.22
VPS13D-206ENST00000476045 RBM27Q9P2N5 1060 aaKnown RBP7.45□□□□□ -1.22
VPS13D-206ENST00000476045 TRIM6-TRIM34B2RNG4 842 aa7.44□□□□□ -1.22
VPS13D-206ENST00000476045 LAPTM4BQ86VI4 370 aa7.44□□□□□ -1.22
VPS13D-206ENST00000476045 CERKQ8TCT0 537 aa7.44□□□□□ -1.22
VPS13D-206ENST00000476045 WRNQ14191 1432 aaPredicted RBP eCLIP7.44□□□□□ -1.22
VPS13D-206ENST00000476045 ARAP1Q96P48 1450 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms