RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 AEBP2Q6ZN18 517 aaPredicted RBP17.97■□□□□ 0.47
VPS13D-206ENST00000476045 CHIC1Q5VXU3 224 aa17.32■□□□□ 0.36
VPS13D-206ENST00000476045 SENP3Q9H4L4 574 aaPredicted RBP15.28■□□□□ 0.04
VPS13D-206ENST00000476045 PHF23Q9BUL5 403 aaPredicted RBP15.19■□□□□ 0.02
VPS13D-206ENST00000476045 FOXD1Q16676 465 aa14.19□□□□□ -0.14
VPS13D-206ENST00000476045 PLPPR3Q6T4P5 718 aa13.92□□□□□ -0.18
VPS13D-206ENST00000476045 PPP6R1Q9UPN7 881 aa13.44□□□□□ -0.26
VPS13D-206ENST00000476045 ADRA2BP18089 450 aa13.37□□□□□ -0.27
VPS13D-206ENST00000476045 PIAS4Q8N2W9 510 aaPredicted RBP13.27□□□□□ -0.29
VPS13D-206ENST00000476045 MSH5O43196 834 aa13.21□□□□□ -0.29
VPS13D-206ENST00000476045 POTEDQ86YR6 584 aa12.44□□□□□ -0.42
VPS13D-206ENST00000476045 SCAF1Q9H7N4 1312 aaKnown RBP12.25□□□□□ -0.45
VPS13D-206ENST00000476045 PPP4R3CPQ6ZMV5 832 aa12.2□□□□□ -0.46
VPS13D-206ENST00000476045 MAPK8IP2Q13387 824 aaPredicted RBP12.19□□□□□ -0.46
VPS13D-206ENST00000476045 DMRT2Q9Y5R5 561 aa12.19□□□□□ -0.46
VPS13D-206ENST00000476045 CNKSR2Q8WXI2 1034 aa11.95□□□□□ -0.5
VPS13D-206ENST00000476045 HOXD11P31277 338 aaPredicted RBP11.86□□□□□ -0.51
VPS13D-206ENST00000476045 RNF216Q9NWF9 866 aaPredicted RBP11.81□□□□□ -0.52
VPS13D-206ENST00000476045 NCBP3Q53F19 620 aaKnown RBP11.79□□□□□ -0.52
VPS13D-206ENST00000476045 NPM3O75607 178 aaKnown RBP11.67□□□□□ -0.54
VPS13D-206ENST00000476045 KCNA4P22459 653 aa11.64□□□□□ -0.55
VPS13D-206ENST00000476045 DNAJC5BQ9UF47 199 aa11.59□□□□□ -0.55
VPS13D-206ENST00000476045 DCAF8L1A6NGE4 600 aa11.43□□□□□ -0.58
VPS13D-206ENST00000476045 RNF39Q9H2S5 420 aa11.32□□□□□ -0.6
VPS13D-206ENST00000476045 C1QBPQ07021 282 aaKnown RBP11.16□□□□□ -0.62
VPS13D-206ENST00000476045 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS13D-206ENST00000476045 SLC4A2P04920 1241 aa11.1□□□□□ -0.63
VPS13D-206ENST00000476045 CACNB1Q02641 598 aaPredicted RBP11.07□□□□□ -0.64
VPS13D-206ENST00000476045 U3KPZ7 1027 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-206ENST00000476045 SLC4A1APQ9BWU0 796 aaKnown RBP11□□□□□ -0.65
VPS13D-206ENST00000476045 FOXD4L1Q9NU39 408 aa10.81□□□□□ -0.68
VPS13D-206ENST00000476045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.8□□□□□ -0.68
VPS13D-206ENST00000476045 HNRNPUL2Q1KMD3 747 aaKnown RBP10.8□□□□□ -0.68
VPS13D-206ENST00000476045 MYCNP04198 464 aaPredicted RBP10.79□□□□□ -0.68
VPS13D-206ENST00000476045 SAMD1Q6SPF0 538 aaPredicted RBP10.75□□□□□ -0.69
VPS13D-206ENST00000476045 ZBTB22O15209 634 aa10.74□□□□□ -0.69
VPS13D-206ENST00000476045 APLP2Q06481 763 aa10.74□□□□□ -0.69
VPS13D-206ENST00000476045 SPINK5Q9NQ38 1064 aaPredicted RBP10.74□□□□□ -0.69
VPS13D-206ENST00000476045 CAPN15O75808 1086 aa10.65□□□□□ -0.7
VPS13D-206ENST00000476045 DSG3P32926 999 aa10.65□□□□□ -0.7
VPS13D-206ENST00000476045 ZNF219Q9P2Y4 722 aaPredicted RBP10.64□□□□□ -0.71
VPS13D-206ENST00000476045 TRHP20396 242 aaPredicted RBP10.52□□□□□ -0.73
VPS13D-206ENST00000476045 ATXN8OSP0DMR3 200 aa10.51□□□□□ -0.73
VPS13D-206ENST00000476045 ATF5Q9Y2D1 282 aaPredicted RBP10.48□□□□□ -0.73
VPS13D-206ENST00000476045 CSRNP3Q8WYN3 585 aa10.45□□□□□ -0.74
VPS13D-206ENST00000476045 NISCHQ9Y2I1 1504 aa10.43□□□□□ -0.74
VPS13D-206ENST00000476045 ABCB7O75027 752 aa10.43□□□□□ -0.74
VPS13D-206ENST00000476045 POLA2Q14181 598 aa10.35□□□□□ -0.75
VPS13D-206ENST00000476045 EHMT2Q96KQ7 1210 aa10.31□□□□□ -0.76
VPS13D-206ENST00000476045 ZBTB12Q9Y330 459 aaPredicted RBP10.25□□□□□ -0.77
VPS13D-206ENST00000476045 RBM42Q9BTD8 480 aaKnown RBP10.16□□□□□ -0.78
VPS13D-206ENST00000476045 MKRN4PQ13434 485 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-206ENST00000476045 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
VPS13D-206ENST00000476045 FBLN2P98095 1184 aa10.02□□□□□ -0.81
VPS13D-206ENST00000476045 AKT1S1Q96B36 256 aa9.98□□□□□ -0.81
VPS13D-206ENST00000476045 SPDYE2BA6NHP3 402 aa9.95□□□□□ -0.82
VPS13D-206ENST00000476045 SPDYE6P0CI01 402 aa9.95□□□□□ -0.82
VPS13D-206ENST00000476045 SPDYE2Q495Y8 402 aa9.95□□□□□ -0.82
VPS13D-206ENST00000476045 SSUH2Q9Y2M2 353 aa9.9□□□□□ -0.82
VPS13D-206ENST00000476045 REM2Q8IYK8 340 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-206ENST00000476045 CHRDL2Q6WN34 429 aa9.8□□□□□ -0.84
VPS13D-206ENST00000476045 POTEHQ6S545 545 aa9.78□□□□□ -0.84
VPS13D-206ENST00000476045 ZNF692Q9BU19 519 aaPredicted RBP9.77□□□□□ -0.85
VPS13D-206ENST00000476045 PITPNM1O00562 1244 aa9.75□□□□□ -0.85
VPS13D-206ENST00000476045 SPDYE1Q8NFV5 336 aaPredicted RBP9.68□□□□□ -0.86
VPS13D-206ENST00000476045 FXR2P51116 673 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS13D-206ENST00000476045 PABPN1Q86U42 306 aaKnown RBP eCLIP9.65□□□□□ -0.86
VPS13D-206ENST00000476045 SPDYE4A6NLX3 237 aa9.64□□□□□ -0.87
VPS13D-206ENST00000476045 PROM2Q8N271 834 aa9.63□□□□□ -0.87
VPS13D-206ENST00000476045 PIP4P2Q8N4L2 257 aa9.63□□□□□ -0.87
VPS13D-206ENST00000476045 CLEC11AQ9Y240 323 aa9.52□□□□□ -0.89
VPS13D-206ENST00000476045 CCDC180Q9P1Z9 1646 aa9.51□□□□□ -0.89
VPS13D-206ENST00000476045 STAG3Q9UJ98 1225 aa9.49□□□□□ -0.89
VPS13D-206ENST00000476045 PRR29P0C7W0 189 aa9.46□□□□□ -0.9
VPS13D-206ENST00000476045 PRKAR2AP13861 404 aaKnown RBP9.46□□□□□ -0.9
VPS13D-206ENST00000476045 FKBP8Q14318 412 aa9.38□□□□□ -0.91
VPS13D-206ENST00000476045 CREBZFQ9NS37 354 aa9.37□□□□□ -0.91
VPS13D-206ENST00000476045 CHADLQ6NUI6 762 aa9.36□□□□□ -0.91
VPS13D-206ENST00000476045 C19orf67A6NJJ6 358 aa9.34□□□□□ -0.91
VPS13D-206ENST00000476045 FARP1Q9Y4F1 1045 aaPredicted RBP9.32□□□□□ -0.92
VPS13D-206ENST00000476045 SP7Q8TDD2 431 aaPredicted RBP9.31□□□□□ -0.92
VPS13D-206ENST00000476045 MNX1P50219 401 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-206ENST00000476045 HAX1O00165 279 aa9.28□□□□□ -0.92
VPS13D-206ENST00000476045 EVX2Q03828 476 aa9.27□□□□□ -0.93
VPS13D-206ENST00000476045 ABCC9O60706 1549 aa9.21□□□□□ -0.93
VPS13D-206ENST00000476045 CD44P16070 742 aaKnown RBP9.18□□□□□ -0.94
VPS13D-206ENST00000476045 FBXO3Q9UK99 471 aa9.17□□□□□ -0.94
VPS13D-206ENST00000476045 NPM1P06748 294 aaKnown RBP eCLIP9.15□□□□□ -0.94
VPS13D-206ENST00000476045 ZNF579Q8NAF0 562 aaKnown RBP9.14□□□□□ -0.95
VPS13D-206ENST00000476045 CLCN6P51797 869 aa9.12□□□□□ -0.95
VPS13D-206ENST00000476045 MIER1Q8N108 512 aa9.09□□□□□ -0.95
VPS13D-206ENST00000476045 GABBR2O75899 941 aa9.08□□□□□ -0.96
VPS13D-206ENST00000476045 PLEKHG5O94827 1062 aa9.08□□□□□ -0.96
VPS13D-206ENST00000476045 VASPP50552 380 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-206ENST00000476045 ZBTB47Q9UFB7 747 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-206ENST00000476045 PLCD3Q8N3E9 789 aa9.06□□□□□ -0.96
VPS13D-206ENST00000476045 ZRANB1Q9UGI0 708 aa9.06□□□□□ -0.96
VPS13D-206ENST00000476045 PAK3O75914 559 aaPredicted RBP9.03□□□□□ -0.96
VPS13D-206ENST00000476045 NUBP1P53384 320 aa9.03□□□□□ -0.96
VPS13D-206ENST00000476045 CCDC61Q9Y6R9 512 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms