RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Esx1O88933 382 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Plin1Q8CGN5 517 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Crocc2F6XLV1 1638 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Znf316Q6PGE4 1016 aa19.87■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Slx4Q6P1D7 1565 aa19.87■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Birc3O08863 600 aa19.87■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Usp40Q8BWR4 1235 aa19.86■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Zscan10Q3URR7 782 aa19.86■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 CatipB9EKE5 520 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Fam184bQ0KK56 942 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Pde4cQ3UEI1 686 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 EspnQ9ET47 871 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 PnisrA2AJT4 805 aaKnown RBP19.83■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 TchhA0A0B4J1F9 1599 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Fgd6Q69ZL1 1399 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Arhgap5P97393 1501 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Ipo9Q91YE6 1041 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Rock1P70335 1354 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 NexmifQ5DTT1 1515 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Utp14aQ640M1 767 aaKnown RBP19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 CenpjQ569L8 1344 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Lmod3E9QA62 571 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Map3k5O35099 1380 aa19.81■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Ccdc141E9Q8Q6 1531 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 U2surpQ6NV83 1029 aaKnown RBP19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 3425401B19RikD3Z1D3 1412 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Prdm16A2A935 1275 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Fam163aQ8CAA5 168 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Chmp4bQ9D8B3 224 aaKnown RBP19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Kif7B7ZNG0 1348 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Zfp777B9EKF4 885 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Nsd2Q8BVE8 1365 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Q7TT23 1179 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Il16O54824 1322 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 ErbinQ80TH2 1402 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Mug1P28665 1476 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Map7O88735 730 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Senp3Q9EP97 568 aaKnown RBP19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Abcc5Q9R1X5 1436 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Cluap1Q8R3P7 413 aa19.77■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Plcb2A3KGF7 1181 aa19.77■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Ksr2Q3UVC0 959 aa19.77■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Sox12Q04890 314 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Znf330Q922H9 316 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 AU015836B2RUM3 263 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Rsph4aQ8BYM7 716 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Cd109Q8R422 1442 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 ChgaP26339 463 aaKnown RBP19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Tmco5bQ80X59 307 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Shq1Q7TMX5 569 aa19.75■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Dnai1Q8C0M8 701 aa19.75■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Grin2aP35436 1464 aa19.75■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 TnnQ80Z71 1560 aa19.73■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Myom3A2ABU4 1439 aa19.73■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 PtmaP26350 111 aa19.73■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Spryd3E9Q9B3 442 aa19.72■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Gm14025A2AP89 1413 aa19.72■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Rtf1A2AQ19 715 aaKnown RBP19.71■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Tsen2Q6P7W5 460 aa19.71■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Plekhg5Q66T02 1073 aa19.7■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Mink1Q9JM52 1308 aa19.69■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Gm1043A0A140LJC2 1431 aa19.68■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Dnajc5bQ9CQ94 199 aa19.68■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Naip5Q9R016 1403 aa19.67■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Gpatch8A2A6A1 1505 aa19.67■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 KnstrnQ9D9Z1 312 aaKnown RBP19.66■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Zfp444Q3TDV8 331 aaKnown RBP19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Ipo8Q7TMY7 1010 aa19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Ccar1Q8CH18 1146 aaKnown RBP19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 GsdmaQ9EST1 446 aa19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Neo1P97798 1493 aa19.64■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Magi1Q6RHR9 1471 aa19.63■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Puf60Q3UEB3 564 aaKnown RBP19.63■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 HnrnpuQ8VEK3 800 aaKnown RBP19.61■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Kcnh8P59111 1102 aa19.6■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Ccdc30Q8BVF4 654 aa19.6■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 MlecQ6ZQI3 291 aaKnown RBP19.6■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Washc2Q6PGL7 1334 aa19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Pak3Q61036 559 aa19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Ppp2r1aQ76MZ3 589 aa19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Rtn4Q99P72 1162 aaKnown RBP19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Mfap1aC0HKD8 439 aaKnown RBP19.58■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Mfap1bC0HKD9 439 aaKnown RBP19.58■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Dnttip2Q8R2M2 758 aaKnown RBP19.58■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Pibf1E9Q6K3 756 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ralbp1Q62172 648 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Rfx7F8VPJ6 1459 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Tnnt1O88346 262 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Hsp90b1P08113 802 aaKnown RBP19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Q3TQI7 289 aaKnown RBP19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Thoc2B1AZI6 1594 aaKnown RBP19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ncoa3O09000 1398 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Kif16bB1AVY7 1312 aa19.56■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Rprd2Q6NXI6 1469 aaKnown RBP19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ncoa1P70365 1447 aa19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 BC005561E9Q5E2 1589 aa19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Prkrip1Q9CWV6 186 aaKnown RBP19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ccdc60Q8C4J0 545 aa19.53■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Gtf3c3Q3TMP1 882 aa19.53■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Samd9lQ69Z37 1561 aa19.52■□□□□ 0.72
Retrieved 100 of 22,080 RNA–protein pairs in 27.3 ms