RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Esx1O88933 382 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Plin1Q8CGN5 517 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Crocc2F6XLV1 1638 aa19.88■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Znf316Q6PGE4 1016 aa19.87■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Slx4Q6P1D7 1565 aa19.87■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Birc3O08863 600 aa19.87■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Usp40Q8BWR4 1235 aa19.86■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Zscan10Q3URR7 782 aa19.86■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 CatipB9EKE5 520 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Fam184bQ0KK56 942 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 Pde4cQ3UEI1 686 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 EspnQ9ET47 871 aa19.85■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 PnisrA2AJT4 805 aaKnown RBP19.83■□□□□ 0.77
Ccdc88b-201ENSMUST00000113440 TchhA0A0B4J1F9 1599 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Fgd6Q69ZL1 1399 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Arhgap5P97393 1501 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Ipo9Q91YE6 1041 aa19.83■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Rock1P70335 1354 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 NexmifQ5DTT1 1515 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Utp14aQ640M1 767 aaKnown RBP19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 CenpjQ569L8 1344 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Lmod3E9QA62 571 aa19.82■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Map3k5O35099 1380 aa19.81■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Ccdc141E9Q8Q6 1531 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 U2surpQ6NV83 1029 aaKnown RBP19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 3425401B19RikD3Z1D3 1412 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Prdm16A2A935 1275 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Fam163aQ8CAA5 168 aa19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Chmp4bQ9D8B3 224 aaKnown RBP19.8■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Kif7B7ZNG0 1348 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Zfp777B9EKF4 885 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Nsd2Q8BVE8 1365 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Q7TT23 1179 aa19.79■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Il16O54824 1322 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 ErbinQ80TH2 1402 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Mug1P28665 1476 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Map7O88735 730 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Senp3Q9EP97 568 aaKnown RBP19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Abcc5Q9R1X5 1436 aa19.78■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Cluap1Q8R3P7 413 aa19.77■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Plcb2A3KGF7 1181 aa19.77■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Ksr2Q3UVC0 959 aa19.77■□□□□ 0.76
Ccdc88b-201ENSMUST00000113440 Sox12Q04890 314 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Znf330Q922H9 316 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 AU015836B2RUM3 263 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Rsph4aQ8BYM7 716 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Cd109Q8R422 1442 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 ChgaP26339 463 aaKnown RBP19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Tmco5bQ80X59 307 aa19.76■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Shq1Q7TMX5 569 aa19.75■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Dnai1Q8C0M8 701 aa19.75■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Grin2aP35436 1464 aa19.75■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 TnnQ80Z71 1560 aa19.73■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Myom3A2ABU4 1439 aa19.73■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 PtmaP26350 111 aa19.73■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Spryd3E9Q9B3 442 aa19.72■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Gm14025A2AP89 1413 aa19.72■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Rtf1A2AQ19 715 aaKnown RBP19.71■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Tsen2Q6P7W5 460 aa19.71■□□□□ 0.75
Ccdc88b-201ENSMUST00000113440 Plekhg5Q66T02 1073 aa19.7■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Mink1Q9JM52 1308 aa19.69■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Gm1043A0A140LJC2 1431 aa19.68■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Dnajc5bQ9CQ94 199 aa19.68■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Naip5Q9R016 1403 aa19.67■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Gpatch8A2A6A1 1505 aa19.67■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 KnstrnQ9D9Z1 312 aaKnown RBP19.66■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Zfp444Q3TDV8 331 aaKnown RBP19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Ipo8Q7TMY7 1010 aa19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Ccar1Q8CH18 1146 aaKnown RBP19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 GsdmaQ9EST1 446 aa19.65■□□□□ 0.74
Ccdc88b-201ENSMUST00000113440 Neo1P97798 1493 aa19.64■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Magi1Q6RHR9 1471 aa19.63■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Puf60Q3UEB3 564 aaKnown RBP19.63■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 HnrnpuQ8VEK3 800 aaKnown RBP19.61■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Kcnh8P59111 1102 aa19.6■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Ccdc30Q8BVF4 654 aa19.6■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 MlecQ6ZQI3 291 aaKnown RBP19.6■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Washc2Q6PGL7 1334 aa19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Pak3Q61036 559 aa19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Ppp2r1aQ76MZ3 589 aa19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Rtn4Q99P72 1162 aaKnown RBP19.59■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Mfap1aC0HKD8 439 aaKnown RBP19.58■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Mfap1bC0HKD9 439 aaKnown RBP19.58■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Dnttip2Q8R2M2 758 aaKnown RBP19.58■□□□□ 0.73
Ccdc88b-201ENSMUST00000113440 Pibf1E9Q6K3 756 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ralbp1Q62172 648 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Rfx7F8VPJ6 1459 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Tnnt1O88346 262 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Hsp90b1P08113 802 aaKnown RBP19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Q3TQI7 289 aaKnown RBP19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Thoc2B1AZI6 1594 aaKnown RBP19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ncoa3O09000 1398 aa19.57■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Kif16bB1AVY7 1312 aa19.56■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Rprd2Q6NXI6 1469 aaKnown RBP19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ncoa1P70365 1447 aa19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 BC005561E9Q5E2 1589 aa19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Prkrip1Q9CWV6 186 aaKnown RBP19.54■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Ccdc60Q8C4J0 545 aa19.53■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Gtf3c3Q3TMP1 882 aa19.53■□□□□ 0.72
Ccdc88b-201ENSMUST00000113440 Samd9lQ69Z37 1561 aa19.52■□□□□ 0.72
Retrieved 100 of 22,080 RNA–protein pairs in 33.9 ms