RNA–Protein interactions for RNA: ENSMUST00000087883.12

Col3a1-201, Transcript of Collagen alpha-1(III) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col3a1, Length 5,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1-201ENSMUST00000087883 Cgnl1Q6AW69 1298 aa17.27■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Smg6P61406 1418 aaKnown RBP17.27■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Sycp2Q9CUU3 1500 aa17.25■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Tomm22Q9CPQ3 142 aa17.25■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Tpd52l1O54818 204 aa17.25■□□□□ 0.35
Col3a1-201ENSMUST00000087883 St18Q80TY4 1045 aa17.24■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Casq1O09165 405 aa17.23■□□□□ 0.35
Col3a1-201ENSMUST00000087883 IbspQ61711 324 aa17.23■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Chmp3Q9CQ10 224 aa17.23■□□□□ 0.35
Col3a1-201ENSMUST00000087883 PrkcshO08795 521 aa17.23■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Rfx1P48377 963 aa17.22■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Filip1lQ6P6L0 1131 aa17.21■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Ftsj3Q9DBE9 838 aaKnown RBP17.21■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Nap1l3Q794H2 544 aa17.21■□□□□ 0.35
Col3a1-201ENSMUST00000087883 Nup155Q99P88 1391 aaKnown RBP17.2■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Utp3Q9JI13 469 aaKnown RBP17.2■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Glipr1l2Q9CQ35 332 aa17.2■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Eif2s2Q99L45 331 aaKnown RBP17.19■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Ak7Q9D2H2 614 aa17.19■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Sox12Q04890 314 aa17.19■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Slc4a10Q5DTL9 1118 aa17.19■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Crybg2B7ZCC2 1516 aa17.19■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Pank3Q8R2W9 370 aa17.19■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Tsen2Q6P7W5 460 aa17.18■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Ccdc60Q8C4J0 545 aa17.18■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Samd1D3YXK1 519 aa17.18■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Drc7Q6V3W6 876 aa17.18■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Sh3bgrQ9WUZ7 214 aa17.17■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Rpap1Q80TE0 1409 aa17.16■□□□□ 0.34
Col3a1-201ENSMUST00000087883 ScribQ80U72 1612 aa17.16■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Taf3Q5HZG4 932 aa17.16■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Psme1P97371 249 aa17.15■□□□□ 0.34
Col3a1-201ENSMUST00000087883 Ccdc47Q9D024 483 aaKnown RBP17.14■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Fmn1Q05860 1466 aa17.14■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Polr3gQ6NXY9 223 aa17.14■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Kif4P33174 1231 aa17.13■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Arid4aF8VPQ2 1261 aaKnown RBP17.13■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Tpm1P58771 284 aa17.13■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Gripap1Q8VD04 806 aa17.13■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Isy1Q69ZQ2 285 aaKnown RBP17.13■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Q8BT18 775 aa17.13■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Smarca2Q6DIC0 1577 aa17.12■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Rock1P70335 1354 aa17.12■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Ccdc34Q3UI66 367 aa17.11■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Fan1Q69ZT1 1020 aa17.11■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Gabpb2P81069 414 aa17.11■□□□□ 0.33
Col3a1-201ENSMUST00000087883 BccipQ9CWI3 316 aa17.11■□□□□ 0.33
Col3a1-201ENSMUST00000087883 G3bp1P97855 465 aaKnown RBP17.11■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Inpp5dQ9ES52 1191 aa17.11■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Arid3cA6PWV5 409 aa17.1■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Plcd4Q8K3R3 807 aa17.1■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Rabep1O35551 862 aa17.1■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Lemd3Q9WU40 921 aa17.1■□□□□ 0.33
Col3a1-201ENSMUST00000087883 CenpjQ569L8 1344 aa17.1■□□□□ 0.33
Col3a1-201ENSMUST00000087883 KinQ8K339 391 aa17.1■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Plekhh2Q8C115 1491 aa17.09■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Stk31Q99MW1 1018 aa17.08■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Usp47Q8BY87 1376 aa17.08■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Gm21969J3QJZ1 289 aa17.08■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Stard8Q8K031 1019 aa17.08■□□□□ 0.33
Col3a1-201ENSMUST00000087883 Txndc2Q6P902 515 aa17.08■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Ppp1r18Q8BQ30 594 aa17.08■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Kif16bB1AVY7 1312 aa17.08■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Srek1Q8BZX4 494 aaKnown RBP17.08■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Tpm2P58774 284 aa17.07■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Cc2d1aQ8K1A6 943 aa17.07■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Kif3bQ61771 747 aa17.07■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Tpm4Q6IRU2 248 aa17.07■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Pdcl3Q8BVF2 240 aa17.07■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Ipo4Q8VI75 1082 aa17.06■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Bicd2Q921C5 820 aa17.06■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Ralbp1Q62172 648 aa17.06■□□□□ 0.32
Col3a1-201ENSMUST00000087883 GsdmaQ9EST1 446 aa17.06■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Cecr2E9Q2Z1 1453 aa17.06■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Dixdc1Q80Y83 711 aa17.05■□□□□ 0.32
Col3a1-201ENSMUST00000087883 AknaQ80VW7 1404 aa17.05■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Phactr2B1AVP0 632 aa17.05■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Esx1O88933 382 aa17.05■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Pds5bQ4VA53 1446 aaKnown RBP17.05■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Fam193aQ8CGI1 1231 aaKnown RBP17.05■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Vps53Q8CCB4 832 aa17.04■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Trim58Q5NCC9 485 aa17.04■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Ubap1lG3UW59 384 aa17.04■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Ipo7Q9EPL8 1038 aaKnown RBP17.04■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Kif7B7ZNG0 1348 aa17.04■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Podxl2Q8CAE9 603 aa17.04■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Kri1Q8VDQ9 704 aaKnown RBP17.03■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Pnmal2G3X9N3 661 aa17.03■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Noc3lQ8VI84 807 aaKnown RBP17.03■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Triml2E9PW10 424 aa17.03■□□□□ 0.32
Col3a1-201ENSMUST00000087883 CftrP26361 1476 aa17.03■□□□□ 0.32
Col3a1-201ENSMUST00000087883 AppP12023 770 aa17.02■□□□□ 0.32
Col3a1-201ENSMUST00000087883 Rec8Q8C5S7 591 aa17.02■□□□□ 0.31
Col3a1-201ENSMUST00000087883 Krt82Q99M74 516 aa17.02■□□□□ 0.31
Col3a1-201ENSMUST00000087883 Chmp4cQ9D7F7 232 aa17.02■□□□□ 0.31
Col3a1-201ENSMUST00000087883 Hmgn5Q9JL35 406 aa17.02■□□□□ 0.31
Col3a1-201ENSMUST00000087883 Ggt6Q6PDE7 497 aa17.01■□□□□ 0.31
Col3a1-201ENSMUST00000087883 Synj1Q8CHC4 1574 aa17.01■□□□□ 0.31
Col3a1-201ENSMUST00000087883 Ccdc173A0JLY1 547 aa17.01■□□□□ 0.31
Col3a1-201ENSMUST00000087883 AampJ3QN89 436 aa17■□□□□ 0.31
Retrieved 100 of 22,080 RNA–protein pairs in 34.8 ms