RNA–Protein interactions for RNA: ENSMUST00000087883.12

Col3a1-201, Transcript of Collagen alpha-1(III) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col3a1, Length 5,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1-201ENSMUST00000087883 Rhox8Q6VSS7 320 aa24.43■■□□□ 1.5
Col3a1-201ENSMUST00000087883 Rpgrip1Q9EPQ2 1331 aa22.9■■□□□ 1.26
Col3a1-201ENSMUST00000087883 Ehmt2Q9Z148 1263 aaKnown RBP22.46■■□□□ 1.19
Col3a1-201ENSMUST00000087883 Las1lA2BE28 776 aaKnown RBP22.27■■□□□ 1.16
Col3a1-201ENSMUST00000087883 Cngb1E1AZ71 1325 aa22.24■■□□□ 1.15
Col3a1-201ENSMUST00000087883 Wdr66E9Q743 1299 aa21.95■■□□□ 1.1
Col3a1-201ENSMUST00000087883 Pelp1Q9DBD5 1123 aaKnown RBP21.79■■□□□ 1.08
Col3a1-201ENSMUST00000087883 Zeb1Q64318 1117 aa21.7■■□□□ 1.06
Col3a1-201ENSMUST00000087883 Ccdc136Q3TVA9 1136 aa21.57■■□□□ 1.04
Col3a1-201ENSMUST00000087883 Ube2uB1AUC4 352 aa21.45■■□□□ 1.02
Col3a1-201ENSMUST00000087883 Esf1Q3V1V3 845 aaKnown RBP21.38■■□□□ 1.01
Col3a1-201ENSMUST00000087883 Gab3Q8BSM5 595 aa21.36■■□□□ 1.01
Col3a1-201ENSMUST00000087883 CenpbP27790 599 aa21.21■□□□□ 0.99
Col3a1-201ENSMUST00000087883 Amer1Q7TS75 1132 aa21.18■□□□□ 0.98
Col3a1-201ENSMUST00000087883 Npm2Q80W85 207 aa21.08■□□□□ 0.96
Col3a1-201ENSMUST00000087883 Acin1Q9JIX8 1338 aaKnown RBP21.05■□□□□ 0.96
Col3a1-201ENSMUST00000087883 Trim41Q5NCC3 630 aa21.05■□□□□ 0.96
Col3a1-201ENSMUST00000087883 Myt1lP97500 1187 aa20.98■□□□□ 0.95
Col3a1-201ENSMUST00000087883 NischQ80TM9 1593 aa20.88■□□□□ 0.93
Col3a1-201ENSMUST00000087883 NefmP08553 848 aa20.83■□□□□ 0.93
Col3a1-201ENSMUST00000087883 Stra8P70278 393 aa20.74■□□□□ 0.91
Col3a1-201ENSMUST00000087883 Slc24a1Q91WD8 1130 aa20.72■□□□□ 0.91
Col3a1-201ENSMUST00000087883 UbtfP25976 765 aaKnown RBP20.72■□□□□ 0.91
Col3a1-201ENSMUST00000087883 Ttbk1Q6PCN3 1308 aa20.52■□□□□ 0.88
Col3a1-201ENSMUST00000087883 Cdk11bP24788 784 aaKnown RBP20.52■□□□□ 0.87
Col3a1-201ENSMUST00000087883 Pcgf6Q99NA9 353 aa20.47■□□□□ 0.87
Col3a1-201ENSMUST00000087883 Myt1Q8CFC2 1127 aa20.4■□□□□ 0.86
Col3a1-201ENSMUST00000087883 4933416C03RikQ3V063 378 aa20.33■□□□□ 0.85
Col3a1-201ENSMUST00000087883 4930567H17RikQ3V0K5 233 aa20.32■□□□□ 0.84
Col3a1-201ENSMUST00000087883 Nop58Q6DFW4 536 aaKnown RBP20.24■□□□□ 0.83
Col3a1-201ENSMUST00000087883 Tnnt3Q9QZ47 272 aa20.24■□□□□ 0.83
Col3a1-201ENSMUST00000087883 Ccdc180J3QNE4 1664 aa20.17■□□□□ 0.82
Col3a1-201ENSMUST00000087883 NrdcQ8BHG1 1161 aa20.16■□□□□ 0.82
Col3a1-201ENSMUST00000087883 HrcG5E8J6 738 aa20.15■□□□□ 0.82
Col3a1-201ENSMUST00000087883 Ppargc1bQ8VHJ7 1014 aa20.11■□□□□ 0.81
Col3a1-201ENSMUST00000087883 Eif5bQ05D44 1216 aaKnown RBP20.11■□□□□ 0.81
Col3a1-201ENSMUST00000087883 Supt5hO55201 1082 aaKnown RBP20.07■□□□□ 0.8
Col3a1-201ENSMUST00000087883 NeflP08551 543 aa20.05■□□□□ 0.8
Col3a1-201ENSMUST00000087883 NclP09405 707 aaKnown RBP20.04■□□□□ 0.8
Col3a1-201ENSMUST00000087883 Neurod1Q60867 357 aa20.02■□□□□ 0.79
Col3a1-201ENSMUST00000087883 Anp32bQ9EST5 272 aaKnown RBP20.01■□□□□ 0.79
Col3a1-201ENSMUST00000087883 Fam50aQ9WV03 339 aaKnown RBP19.98■□□□□ 0.79
Col3a1-201ENSMUST00000087883 Il27Q8K3I6 234 aa19.96■□□□□ 0.79
Col3a1-201ENSMUST00000087883 Ap3b1Q9Z1T1 1105 aa19.93■□□□□ 0.78
Col3a1-201ENSMUST00000087883 TonslQ6NZL6 1363 aa19.85■□□□□ 0.77
Col3a1-201ENSMUST00000087883 Rtl5Q5DTT4 599 aa19.84■□□□□ 0.77
Col3a1-201ENSMUST00000087883 Rtl1Q7M732 1744 aa19.76■□□□□ 0.75
Col3a1-201ENSMUST00000087883 Os9Q8K2C7 672 aa19.74■□□□□ 0.75
Col3a1-201ENSMUST00000087883 Mier1Q5UAK0 511 aa19.68■□□□□ 0.74
Col3a1-201ENSMUST00000087883 DiexfQ8BTT6 772 aaKnown RBP19.67■□□□□ 0.74
Col3a1-201ENSMUST00000087883 Abcc9P70170 1546 aa19.63■□□□□ 0.73
Col3a1-201ENSMUST00000087883 Anp32aO35381 247 aa19.57■□□□□ 0.72
Col3a1-201ENSMUST00000087883 DaxxO35613 739 aa19.51■□□□□ 0.71
Col3a1-201ENSMUST00000087883 ClspnQ80YR7 1315 aa19.5■□□□□ 0.71
Col3a1-201ENSMUST00000087883 Zcchc6Q5BLK4 1491 aaKnown RBP19.48■□□□□ 0.71
Col3a1-201ENSMUST00000087883 Gm38655A0A286YDK6 273 aa19.4■□□□□ 0.7
Col3a1-201ENSMUST00000087883 Zbtb7cQ8VCZ7 619 aa19.29■□□□□ 0.68
Col3a1-201ENSMUST00000087883 Mapk8ip2Q9ERE9 830 aa19.28■□□□□ 0.68
Col3a1-201ENSMUST00000087883 Csrnp3P59055 597 aa19.28■□□□□ 0.68
Col3a1-201ENSMUST00000087883 Plekhg3Q4VAC9 1341 aa19.28■□□□□ 0.68
Col3a1-201ENSMUST00000087883 Lmod2Q3UHZ5 550 aa19.27■□□□□ 0.68
Col3a1-201ENSMUST00000087883 Anks4bQ8K3X6 423 aa19.21■□□□□ 0.67
Col3a1-201ENSMUST00000087883 Abcc8B2RUS7 1588 aa19.19■□□□□ 0.66
Col3a1-201ENSMUST00000087883 Zbtb4Q5F293 982 aa19.18■□□□□ 0.66
Col3a1-201ENSMUST00000087883 Sall2Q9QX96 1004 aa19.18■□□□□ 0.66
Col3a1-201ENSMUST00000087883 ArxO35085 564 aa19.17■□□□□ 0.66
Col3a1-201ENSMUST00000087883 Hnrnpul2Q00PI9 745 aaKnown RBP19.14■□□□□ 0.65
Col3a1-201ENSMUST00000087883 Nlrp6Q91WS2 869 aa19.13■□□□□ 0.65
Col3a1-201ENSMUST00000087883 Aplp2Q06335 707 aa19.11■□□□□ 0.65
Col3a1-201ENSMUST00000087883 Chic1Q8CBW7 227 aa19.11■□□□□ 0.65
Col3a1-201ENSMUST00000087883 Polr3glQ8R0C0 218 aa19.11■□□□□ 0.65
Col3a1-201ENSMUST00000087883 Eid3Q3V124 375 aa19.08■□□□□ 0.64
Col3a1-201ENSMUST00000087883 Prdm10Q3UTQ7 1184 aa19.02■□□□□ 0.64
Col3a1-201ENSMUST00000087883 Ppp4r2Q0VGB7 417 aa19.01■□□□□ 0.63
Col3a1-201ENSMUST00000087883 Calr4Q3TQS0 420 aa19■□□□□ 0.63
Col3a1-201ENSMUST00000087883 Erich6D3Z6S9 713 aa18.97■□□□□ 0.63
Col3a1-201ENSMUST00000087883 Gm35339A0A140LHH9 1649 aa18.96■□□□□ 0.63
Col3a1-201ENSMUST00000087883 Gm13697A2AK42 830 aa18.92■□□□□ 0.62
Col3a1-201ENSMUST00000087883 Npm1Q61937 292 aaKnown RBP18.92■□□□□ 0.62
Col3a1-201ENSMUST00000087883 Atp1b4Q99ME6 356 aa18.9■□□□□ 0.62
Col3a1-201ENSMUST00000087883 CatipB9EKE5 520 aa18.84■□□□□ 0.61
Col3a1-201ENSMUST00000087883 Upf2A2AT37 1269 aaKnown RBP18.83■□□□□ 0.61
Col3a1-201ENSMUST00000087883 Dcaf1Q80TR8 1506 aa18.82■□□□□ 0.6
Col3a1-201ENSMUST00000087883 Wdr43Q6ZQL4 677 aaKnown RBP18.82■□□□□ 0.6
Col3a1-201ENSMUST00000087883 Ifnlr1Q8CGK5 535 aa18.81■□□□□ 0.6
Col3a1-201ENSMUST00000087883 Clip1Q922J3 1391 aa18.81■□□□□ 0.6
Col3a1-201ENSMUST00000087883 Hsp90aa1P07901 733 aaKnown RBP18.79■□□□□ 0.6
Col3a1-201ENSMUST00000087883 Rad21Q61550 635 aaKnown RBP18.76■□□□□ 0.59
Col3a1-201ENSMUST00000087883 Rangap1P46061 589 aaKnown RBP18.76■□□□□ 0.59
Col3a1-201ENSMUST00000087883 Ythdc1E9Q5K9 736 aaKnown RBP18.75■□□□□ 0.59
Col3a1-201ENSMUST00000087883 Lmod3E9QA62 571 aa18.73■□□□□ 0.59
Col3a1-201ENSMUST00000087883 Ccer2J3QPU5 274 aa18.71■□□□□ 0.59
Col3a1-201ENSMUST00000087883 Hdac5Q9Z2V6 1113 aa18.7■□□□□ 0.58
Col3a1-201ENSMUST00000087883 Mrs2Q5NCE8 434 aa18.7■□□□□ 0.58
Col3a1-201ENSMUST00000087883 DekQ7TNV0 380 aaKnown RBP18.68■□□□□ 0.58
Col3a1-201ENSMUST00000087883 Ccdc9Q8VC31 543 aaKnown RBP18.68■□□□□ 0.58
Col3a1-201ENSMUST00000087883 Cep164Q5DU05 1446 aa18.65■□□□□ 0.58
Col3a1-201ENSMUST00000087883 Vsig10D3YX43 558 aa18.65■□□□□ 0.58
Col3a1-201ENSMUST00000087883 Gm13695A2AK44 830 aa18.63■□□□□ 0.57
Col3a1-201ENSMUST00000087883 1700123L14RikQ3V2K7 440 aa18.62■□□□□ 0.57
Retrieved 100 of 22,080 RNA–protein pairs in 59.3 ms