Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm25239-201ENSMUST00000174915 86 ntBASIC43.48■■■■■ 4.55
Vps53Q8CCB4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.34■■■■■ 4.05
Vps53Q8CCB4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
Vps53Q8CCB4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38.9■■■■□ 3.82
Vps53Q8CCB4 Gm24109-201ENSMUST00000175489 103 ntBASIC37.8■■■■□ 3.64
Vps53Q8CCB4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37.79■■■■□ 3.64
Vps53Q8CCB4 Gm15042-201ENSMUST00000120212 883 ntBASIC37.69■■■■□ 3.62
Vps53Q8CCB4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC37.6■■■■□ 3.61
Vps53Q8CCB4 Gm15045-201ENSMUST00000117359 883 ntBASIC36.75■■■■□ 3.47
Vps53Q8CCB4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.74■■■■□ 3.47
Vps53Q8CCB4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
Vps53Q8CCB4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.72■■■■□ 3.47
Vps53Q8CCB4 Gm23366-201ENSMUST00000175022 89 ntBASIC36.31■■■■□ 3.4
Vps53Q8CCB4 Psd-208ENSMUST00000224556 2034 ntBASIC36.22■■■■□ 3.39
Vps53Q8CCB4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.1■■■■□ 3.37
Vps53Q8CCB4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
Vps53Q8CCB4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC35.52■■■■□ 3.28
Vps53Q8CCB4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.38■■■■□ 3.25
Vps53Q8CCB4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
Vps53Q8CCB4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC35.29■■■■□ 3.24
Vps53Q8CCB4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
Vps53Q8CCB4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.07■■■■□ 3.2
Vps53Q8CCB4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.04■■■■□ 3.2
Vps53Q8CCB4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
Vps53Q8CCB4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.9■■■■□ 3.18
Vps53Q8CCB4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Vps53Q8CCB4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Vps53Q8CCB4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
Vps53Q8CCB4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
Vps53Q8CCB4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
Vps53Q8CCB4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.66■■■■□ 3.14
Vps53Q8CCB4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
Vps53Q8CCB4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.5■■■■□ 3.11
Vps53Q8CCB4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
Vps53Q8CCB4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
Vps53Q8CCB4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.47■■■■□ 3.11
Vps53Q8CCB4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.47■■■■□ 3.11
Vps53Q8CCB4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
Vps53Q8CCB4 Gm25238-201ENSMUST00000174914 89 ntBASIC34.41■■■■□ 3.1
Vps53Q8CCB4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34.35■■■■□ 3.09
Vps53Q8CCB4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34.32■■■■□ 3.08
Vps53Q8CCB4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
Vps53Q8CCB4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34.1■■■■□ 3.05
Vps53Q8CCB4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
Vps53Q8CCB4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34.02■■■■□ 3.04
Vps53Q8CCB4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
Vps53Q8CCB4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.77■■■■□ 3
Vps53Q8CCB4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.68■■■□□ 2.98
Vps53Q8CCB4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
Vps53Q8CCB4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.6■■■□□ 2.97
Vps53Q8CCB4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.59■■■□□ 2.97
Vps53Q8CCB4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.46■■■□□ 2.95
Vps53Q8CCB4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC33.43■■■□□ 2.94
Vps53Q8CCB4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Vps53Q8CCB4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.38■■■□□ 2.93
Vps53Q8CCB4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.35■■■□□ 2.93
Vps53Q8CCB4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33.31■■■□□ 2.92
Vps53Q8CCB4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Vps53Q8CCB4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Vps53Q8CCB4 Gm10524-201ENSMUST00000181931 1893 ntBASIC33.19■■■□□ 2.9
Vps53Q8CCB4 Gm25262-201ENSMUST00000174934 133 ntBASIC33.19■■■□□ 2.9
Vps53Q8CCB4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
Vps53Q8CCB4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Vps53Q8CCB4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
Vps53Q8CCB4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.05■■■□□ 2.88
Vps53Q8CCB4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33.05■■■□□ 2.88
Vps53Q8CCB4 Gm27325-201ENSMUST00000175467 74 ntBASIC32.97■■■□□ 2.87
Vps53Q8CCB4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Vps53Q8CCB4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.7■■■□□ 2.83
Vps53Q8CCB4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Vps53Q8CCB4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Vps53Q8CCB4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Vps53Q8CCB4 Rab21-202ENSMUST00000218831 843 ntBASIC32.6■■■□□ 2.81
Vps53Q8CCB4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.58■■■□□ 2.81
Vps53Q8CCB4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.56■■■□□ 2.8
Vps53Q8CCB4 Gm26115-201ENSMUST00000175605 87 ntBASIC32.49■■■□□ 2.79
Vps53Q8CCB4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Vps53Q8CCB4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Vps53Q8CCB4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.45■■■□□ 2.78
Vps53Q8CCB4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32.43■■■□□ 2.78
Vps53Q8CCB4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.41■■■□□ 2.78
Vps53Q8CCB4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Vps53Q8CCB4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC32.38■■■□□ 2.77
Vps53Q8CCB4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.31■■■□□ 2.76
Vps53Q8CCB4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
Vps53Q8CCB4 Gm42596-201ENSMUST00000196305 1958 ntBASIC32.28■■■□□ 2.76
Vps53Q8CCB4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC32.28■■■□□ 2.76
Vps53Q8CCB4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.26■■■□□ 2.76
Vps53Q8CCB4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Vps53Q8CCB4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC32.26■■■□□ 2.75
Vps53Q8CCB4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.26■■■□□ 2.75
Vps53Q8CCB4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.25■■■□□ 2.75
Vps53Q8CCB4 Gm8109-201ENSMUST00000194076 746 ntBASIC32.22■■■□□ 2.75
Vps53Q8CCB4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
Vps53Q8CCB4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32.15■■■□□ 2.74
Vps53Q8CCB4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Vps53Q8CCB4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.08■■■□□ 2.73
Vps53Q8CCB4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Vps53Q8CCB4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Vps53Q8CCB4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31.94■■■□□ 2.7
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms