RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C BGL2P15703 313 aaKnown RBP1.29□□□□□ -2.2
PCF11YDR228C TKL2P33315 681 aa1.29□□□□□ -2.2
PCF11YDR228C SPP381P38282 291 aaPredicted RBP1.29□□□□□ -2.2
PCF11YDR228C YMR262WP38430 313 aa1.29□□□□□ -2.2
PCF11YDR228C RPS14BP39516 138 aaKnown RBP1.29□□□□□ -2.2
PCF11YDR228C RRG9P40156 214 aa1.29□□□□□ -2.2
PCF11YDR228C ECM19Q06011 112 aa1.29□□□□□ -2.2
PCF11YDR228C ALE1Q08548 619 aa1.29□□□□□ -2.2
PCF11YDR228C MMT2Q08970 484 aa1.29□□□□□ -2.2
PCF11YDR228C RPL1AP0CX43 217 aaKnown RBP1.28□□□□□ -2.2
PCF11YDR228C RPL1BP0CX44 217 aaKnown RBP1.28□□□□□ -2.2
PCF11YDR228C KAP104P38217 918 aaKnown RBP1.28□□□□□ -2.2
PCF11YDR228C ECM14P38836 430 aa1.28□□□□□ -2.2
PCF11YDR228C MNL1P38888 796 aa1.28□□□□□ -2.2
PCF11YDR228C MOB2P43563 287 aa1.28□□□□□ -2.2
PCF11YDR228C YJR030CP47101 745 aa1.28□□□□□ -2.2
PCF11YDR228C RET3P53600 189 aa1.28□□□□□ -2.2
PCF11YDR228C SPC19Q03954 165 aa1.28□□□□□ -2.2
PCF11YDR228C YPR078CQ06813 372 aa1.28□□□□□ -2.2
PCF11YDR228C PRP46Q12417 451 aaPredicted RBP1.28□□□□□ -2.2
PCF11YDR228C ISA2Q12425 185 aa1.28□□□□□ -2.2
PCF11YDR228C HPR1P17629 752 aaKnown RBP1.27□□□□□ -2.21
PCF11YDR228C FAR1P21268 830 aa1.27□□□□□ -2.21
PCF11YDR228C RPB9P27999 122 aa1.27□□□□□ -2.21
PCF11YDR228C LCP5P40079 357 aaPredicted RBP1.27□□□□□ -2.21
PCF11YDR228C SUB1P54000 292 aaKnown RBP1.27□□□□□ -2.21
PCF11YDR228C SPE3Q12074 293 aaKnown RBP1.27□□□□□ -2.21
PCF11YDR228C SRN2Q99176 213 aa1.27□□□□□ -2.21
PCF11YDR228C UBA3Q99344 299 aa1.27□□□□□ -2.21
PCF11YDR228C EFB1P32471 206 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C PPQ1P32945 549 aa1.26□□□□□ -2.21
PCF11YDR228C TAE1P38340 232 aa1.26□□□□□ -2.21
PCF11YDR228C HSH155P49955 971 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C GTO3Q04806 366 aa1.26□□□□□ -2.21
PCF11YDR228C RPN8Q08723 338 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C DFM1Q12743 341 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C BEM2P39960 2167 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C SMC2P38989 1170 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C LYS12P40495 371 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C YGL088WP53151 121 aa1.26□□□□□ -2.21
PCF11YDR228C RPN5Q12250 445 aaKnown RBP1.26□□□□□ -2.21
PCF11YDR228C MIG1P27705 504 aa1.25□□□□□ -2.21
PCF11YDR228C YFR018CP43599 363 aa1.25□□□□□ -2.21
PCF11YDR228C TDH2P00358 332 aaKnown RBP1.24□□□□□ -2.21
PCF11YDR228C TDH3P00359 332 aaKnown RBP RIP-Chip data1.24□□□□□ -2.21not detected
PCF11YDR228C RPS16AP0CX51 143 aaKnown RBP1.24□□□□□ -2.21
PCF11YDR228C RPS16BP0CX52 143 aaKnown RBP1.24□□□□□ -2.21
PCF11YDR228C DAL81P21657 970 aa1.24□□□□□ -2.21
PCF11YDR228C URA10P30402 227 aa1.24□□□□□ -2.21
PCF11YDR228C SRP72P38688 640 aaKnown RBP1.24□□□□□ -2.21
PCF11YDR228C YPT35P38815 214 aaKnown RBP1.24□□□□□ -2.21
PCF11YDR228C YHR182WP38870 785 aa1.24□□□□□ -2.21
PCF11YDR228C LST7P53237 242 aa1.24□□□□□ -2.21
PCF11YDR228C UTP15Q04305 513 aaKnown RBP1.24□□□□□ -2.21
PCF11YDR228C YDR222WQ04925 415 aa1.24□□□□□ -2.21
PCF11YDR228C YPL264CQ08980 353 aa1.24□□□□□ -2.21
PCF11YDR228C MKK1P32490 508 aa1.24□□□□□ -2.21
PCF11YDR228C LCB2P40970 561 aa1.24□□□□□ -2.21
PCF11YDR228C YMR244WQ04018 355 aa1.24□□□□□ -2.21
PCF11YDR228C VPS63O13549 108 aa1.23□□□□□ -2.21
PCF11YDR228C DBR1P24309 405 aaKnown RBP1.23□□□□□ -2.21
PCF11YDR228C MSK1P32048 576 aa1.23□□□□□ -2.21
PCF11YDR228C PEX5P35056 612 aa1.23□□□□□ -2.21
PCF11YDR228C IST2P38250 946 aa1.23□□□□□ -2.21
PCF11YDR228C YGP1P38616 354 aaKnown RBP1.23□□□□□ -2.21
PCF11YDR228C MIC19P43594 170 aa1.23□□□□□ -2.21
PCF11YDR228C CIK1Q01649 594 aa1.23□□□□□ -2.21
PCF11YDR228C YPL113CQ02961 396 aa1.23□□□□□ -2.21
PCF11YDR228C YOL075CQ08234 1294 aa1.23□□□□□ -2.21
PCF11YDR228C TAF10Q12030 206 aa1.23□□□□□ -2.21
PCF11YDR228C SGT2Q12118 346 aaKnown RBP1.23□□□□□ -2.21
PCF11YDR228C PHO84P25297 587 aaKnown RBP1.22□□□□□ -2.21
PCF11YDR228C PSO2P30620 661 aa1.22□□□□□ -2.21
PCF11YDR228C ZRT3P34240 503 aa1.22□□□□□ -2.21
PCF11YDR228C ATG12P38316 186 aa1.22□□□□□ -2.21
PCF11YDR228C ATG7P38862 630 aa1.22□□□□□ -2.21
PCF11YDR228C SHE4P51534 789 aa1.22□□□□□ -2.21
PCF11YDR228C LSG1P53145 640 aaKnown RBP1.22□□□□□ -2.21
PCF11YDR228C NRM1P53718 249 aa1.22□□□□□ -2.21
PCF11YDR228C INP1Q03694 420 aa1.22□□□□□ -2.21
PCF11YDR228C YPR063CQ12160 140 aa1.22□□□□□ -2.21
PCF11YDR228C RPN6Q12377 434 aa1.22□□□□□ -2.21
PCF11YDR228C AIM45Q12480 344 aaKnown RBP1.22□□□□□ -2.21
PCF11YDR228C GRR1P24814 1151 aa1.22□□□□□ -2.21
PCF11YDR228C INO2P26798 304 aa1.22□□□□□ -2.21
PCF11YDR228C ARO4P32449 370 aaKnown RBP1.22□□□□□ -2.21
PCF11YDR228C YKL071WP36086 256 aa1.22□□□□□ -2.21
PCF11YDR228C RCK1P38622 512 aa1.22□□□□□ -2.21
PCF11YDR228C YFR045WP43617 309 aa1.22□□□□□ -2.21
PCF11YDR228C YML6P51998 286 aa1.22□□□□□ -2.21
PCF11YDR228C RLP24Q07915 199 aaKnown RBP1.22□□□□□ -2.21
PCF11YDR228C MET2P08465 486 aa1.21□□□□□ -2.22
PCF11YDR228C MED8P38304 223 aa1.21□□□□□ -2.22
PCF11YDR228C PCL7P40186 285 aa1.21□□□□□ -2.22
PCF11YDR228C EFM4P40516 257 aa1.21□□□□□ -2.22
PCF11YDR228C ASG7P46993 209 aa1.21□□□□□ -2.22
PCF11YDR228C MIX17Q03667 156 aa1.21□□□□□ -2.22
PCF11YDR228C CSI1Q04368 295 aa1.21□□□□□ -2.22
PCF11YDR228C CSM3Q04659 317 aa1.21□□□□□ -2.22
PCF11YDR228C DXO1Q06349 442 aa1.21□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms