RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	GOR1	P53839	350 aa		0.89	□□□□□ -2.27
UBP3	YER151C	SAM50	P53969	484 aa		0.89	□□□□□ -2.27
UBP3	YER151C	YDR249C	Q03787	373 aa		0.89	□□□□□ -2.27
UBP3	YER151C	ATG16	Q03818	150 aa		0.89	□□□□□ -2.27
UBP3	YER151C	DBP9	Q06218	594 aa	Known RBP	0.89	□□□□□ -2.27
UBP3	YER151C	RTT109	Q07794	436 aa		0.89	□□□□□ -2.27
UBP3	YER151C	MCH4	Q08268	501 aa		0.89	□□□□□ -2.27
UBP3	YER151C	AI5_BETA	Q9ZZX0	354 aa		0.89	□□□□□ -2.27
UBP3	YER151C	ATP2	P00830	511 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	RAD52	P06778	471 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	MRS3	P10566	314 aa		0.88	□□□□□ -2.27
UBP3	YER151C	HYM1	P32464	399 aa		0.88	□□□□□ -2.27
UBP3	YER151C	KAR9	P32526	644 aa		0.88	□□□□□ -2.27
UBP3	YER151C	SIP1	P32578	815 aa		0.88	□□□□□ -2.27
UBP3	YER151C	SPR1	P32603	445 aa		0.88	□□□□□ -2.27
UBP3	YER151C	TIF3	P34167	436 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	YKL097C	P34245	136 aa		0.88	□□□□□ -2.27
UBP3	YER151C	PTC1	P35182	281 aa		0.88	□□□□□ -2.27
UBP3	YER151C	YNK1	P36010	153 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	NUP133	P36161	1157 aa		0.88	□□□□□ -2.27
UBP3	YER151C	JEM1	P40358	645 aa		0.88	□□□□□ -2.27
UBP3	YER151C	VHS2	P40463	436 aa		0.88	□□□□□ -2.27
UBP3	YER151C	AYR1	P40471	297 aa		0.88	□□□□□ -2.27
UBP3	YER151C	YJR149W	P47177	404 aa		0.88	□□□□□ -2.27
UBP3	YER151C	GPI8	P49018	411 aa		0.88	□□□□□ -2.27
UBP3	YER151C	COG1	P53079	417 aa		0.88	□□□□□ -2.27
UBP3	YER151C	PPM1	Q04081	328 aa		0.88	□□□□□ -2.27
UBP3	YER151C	LDB18	Q07887	179 aa		0.88	□□□□□ -2.27
UBP3	YER151C	VPS54	Q12071	889 aa		0.88	□□□□□ -2.27
UBP3	YER151C	ATG9	Q12142	997 aa		0.88	□□□□□ -2.27
UBP3	YER151C	RUD3	Q12234	484 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	Q0297	Q9ZZV8	51 aa		0.88	□□□□□ -2.27
UBP3	YER151C	QCR7	P00128	127 aa		0.88	□□□□□ -2.27
UBP3	YER151C	LEU4	P06208	619 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	SPO16	P17122	198 aa		0.88	□□□□□ -2.27
UBP3	YER151C	TYR1	P20049	452 aa		0.88	□□□□□ -2.27
UBP3	YER151C	TOM40	P23644	387 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	VMA16	P23968	213 aa		0.88	□□□□□ -2.27
UBP3	YER151C	PHO91	P27514	894 aa		0.88	□□□□□ -2.27
UBP3	YER151C	POP5	P28005	173 aa		0.88	□□□□□ -2.27
UBP3	YER151C	PDC2	P32896	925 aa		0.88	□□□□□ -2.27
UBP3	YER151C	MTR2	P34232	184 aa	Known RBP	0.88	□□□□□ -2.27
UBP3	YER151C	LNP1	P38878	278 aa		0.88	□□□□□ -2.27
UBP3	YER151C	PCL6	P40038	420 aa		0.88	□□□□□ -2.27
UBP3	YER151C	YIR014W	P40570	242 aa		0.88	□□□□□ -2.27
UBP3	YER151C	BUD32	P53323	261 aa		0.88	□□□□□ -2.27
UBP3	YER151C	BET4	Q00618	327 aa		0.88	□□□□□ -2.27
UBP3	YER151C	MTG1	Q03151	367 aa	Predicted RBP	0.88	□□□□□ -2.27
UBP3	YER151C	EKI1	Q03764	534 aa		0.88	□□□□□ -2.27
UBP3	YER151C	ECM11	Q04110	302 aa		0.88	□□□□□ -2.27
UBP3	YER151C	CRN1	Q06440	651 aa		0.88	□□□□□ -2.27
UBP3	YER151C	NUS1	Q12063	375 aa		0.88	□□□□□ -2.27
UBP3	YER151C	ARP6	Q12509	438 aa		0.88	□□□□□ -2.27
UBP3	YER151C	VCX1	Q99385	411 aa		0.88	□□□□□ -2.27
UBP3	YER151C	BAR1	P12630	587 aa		0.87	□□□□□ -2.27
UBP3	YER151C	KSS1	P14681	368 aa		0.87	□□□□□ -2.27
UBP3	YER151C	SPB1	P25582	841 aa	Predicted RBP	0.87	□□□□□ -2.27
UBP3	YER151C	YME1	P32795	747 aa		0.87	□□□□□ -2.27
UBP3	YER151C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
UBP3	YER151C	LOS1	P33418	1100 aa	Predicted RBP	0.87	□□□□□ -2.27
UBP3	YER151C	PRX1	P34227	261 aa	Known RBP	0.87	□□□□□ -2.27
UBP3	YER151C	MAK5	P38112	773 aa	Predicted RBP	0.87	□□□□□ -2.27
UBP3	YER151C	YJL068C	P40363	299 aa		0.87	□□□□□ -2.27
UBP3	YER151C	ERG10	P41338	398 aa	Known RBP	0.87	□□□□□ -2.27
UBP3	YER151C	CUP9	P41817	306 aa		0.87	□□□□□ -2.27
UBP3	YER151C	SPG5	P42933	373 aa		0.87	□□□□□ -2.27
UBP3	YER151C	YFL064C	P43540	174 aa		0.87	□□□□□ -2.27
UBP3	YER151C	JHD2	P47156	728 aa	Predicted RBP	0.87	□□□□□ -2.27
UBP3	YER151C	TOM22	P49334	152 aa		0.87	□□□□□ -2.27
UBP3	YER151C	RBG2	P53295	368 aa	Known RBP	0.87	□□□□□ -2.27
UBP3	YER151C	AQR1	P53943	586 aa		0.87	□□□□□ -2.27
UBP3	YER151C	REG1	Q00816	1014 aa		0.87	□□□□□ -2.27
UBP3	YER151C	NUP100	Q02629	959 aa		0.87	□□□□□ -2.27
UBP3	YER151C	YMR102C	Q03177	834 aa		0.87	□□□□□ -2.27
UBP3	YER151C	KRE28	Q04431	385 aa		0.87	□□□□□ -2.27
UBP3	YER151C	YLR281C	Q05863	155 aa		0.87	□□□□□ -2.27
UBP3	YER151C	LUC7	Q07508	261 aa	Predicted RBP	0.87	□□□□□ -2.27
UBP3	YER151C	LDS2	Q08218	356 aa		0.87	□□□□□ -2.27
UBP3	YER151C	ESA1	Q08649	445 aa		0.87	□□□□□ -2.27
UBP3	YER151C	YPR202W	Q08993	238 aa		0.87	□□□□□ -2.27
UBP3	YER151C	RAD28	Q12021	506 aa		0.87	□□□□□ -2.27
UBP3	YER151C	YLR049C	Q12110	428 aa		0.87	□□□□□ -2.27
UBP3	YER151C	ATP4	P05626	244 aa		0.87	□□□□□ -2.27
UBP3	YER151C	ARD1	P07347	238 aa	Predicted RBP	0.87	□□□□□ -2.27
UBP3	YER151C	HNM1	P19807	563 aa		0.87	□□□□□ -2.27
UBP3	YER151C	MGR1	P25573	417 aa		0.87	□□□□□ -2.27
UBP3	YER151C	MRE11	P32829	692 aa		0.87	□□□□□ -2.27
UBP3	YER151C	MSN4	P33749	630 aa		0.87	□□□□□ -2.27
UBP3	YER151C	YBR144C	P34215	104 aa		0.87	□□□□□ -2.27
UBP3	YER151C	TRM7	P38238	310 aa	Known RBP	0.87	□□□□□ -2.27
UBP3	YER151C	FSH1	P38777	243 aa	Known RBP	0.87	□□□□□ -2.27
UBP3	YER151C	MNL1	P38888	796 aa		0.87	□□□□□ -2.27
UBP3	YER151C	AIM10	P39965	576 aa	Known RBP	0.87	□□□□□ -2.27
UBP3	YER151C	ECM10	P39987	644 aa		0.87	□□□□□ -2.27
UBP3	YER151C	PHM8	P40025	321 aa		0.87	□□□□□ -2.27
UBP3	YER151C	NDE1	P40215	560 aa		0.87	□□□□□ -2.27
UBP3	YER151C	LCB2	P40970	561 aa		0.87	□□□□□ -2.27
UBP3	YER151C	CCC1	P47818	322 aa		0.87	□□□□□ -2.27
UBP3	YER151C	DRN1	P53255	507 aa	Known RBP	0.87	□□□□□ -2.27
UBP3	YER151C	IST1	P53843	298 aa	Predicted RBP	0.87	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms