RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	MMF1	P40185	145 aa	Known RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	YJL070C	P40361	888 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	LYS12	P40495	371 aa	Known RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	UTP25	P40498	721 aa	Known RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	FMP33	P46998	180 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	HMS2	P47175	358 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	YGR117C	P53270	476 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	GPI1	P53306	609 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	PGA2	P53903	129 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	EAF7	P53911	425 aa	Known RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	MMT1	Q03218	510 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	SWF1	Q04629	336 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	IVY1	Q04934	453 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	SSQ1	Q05931	657 aa	Predicted RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	LDS2	Q08218	356 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	REX4	Q08237	289 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	PFA4	Q12006	378 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	RDL1	Q12305	139 aa	Known RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	PRP46	Q12417	451 aa	Predicted RBP	4.06	□□□□□ -1.76
SOF1	YLL011W	RGS2	Q99188	309 aa		4.06	□□□□□ -1.76
SOF1	YLL011W	RNA1	P11745	407 aa	Known RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	BUB3	P26449	341 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	CTS1	P29029	562 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	SNC1	P31109	117 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	ASF2	P32448	525 aa	Predicted RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	KRE6	P32486	720 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	MGM101	P32787	269 aa	Known RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	FLO10	P36170	1169 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	LCP5	P40079	357 aa	Predicted RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	TOS2	P50078	622 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	YGR168C	P53293	376 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	SPP2	Q02521	185 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	ARP10	Q04549	284 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	PUS9	Q12069	462 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	TY4B-H	P0C2J7	1802 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	TY4B-J	P47024	1803 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	SSK22	P25390	1331 aa	Predicted RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	GAL4	P04386	881 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	MSF1	P08425	469 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	ARF1	P11076	181 aa	Known RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	CDC23	P16522	626 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	YCR016W	P25617	290 aa	Known RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	CWP1	P28319	239 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	DOA1	P36037	715 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	YKL162C	P36052	402 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	YBR056W	P38081	501 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	SBE22	P38814	852 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	VRG4	P40107	337 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	FMC1	P40491	155 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	NUP100	Q02629	959 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	FMP30	Q02883	468 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	SLD5	Q03406	294 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	DIB1	Q06819	143 aa	Predicted RBP	4.05	□□□□□ -1.76
SOF1	YLL011W	SHS1	Q07657	551 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	YOL075C	Q08234	1294 aa		4.05	□□□□□ -1.76
SOF1	YLL011W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
SOF1	YLL011W	POL30	P15873	258 aa	Known RBP	4.04	□□□□□ -1.76
SOF1	YLL011W	MXR2	P25566	168 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	ZUO1	P32527	433 aa	Known RBP	4.04	□□□□□ -1.76
SOF1	YLL011W	ARC19	P33204	171 aa	Known RBP	4.04	□□□□□ -1.76
SOF1	YLL011W	MYO3	P36006	1272 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	YKL071W	P36086	256 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	MMS21	P38632	267 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	ISC1	P40015	477 aa	Known RBP	4.04	□□□□□ -1.76
SOF1	YLL011W	YMR134W	P40207	237 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	BTT1	P40314	149 aa	Predicted RBP	4.04	□□□□□ -1.76
SOF1	YLL011W	OTU1	P43558	301 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	RIP-Chip
SOF1	YLL011W	GTO3	Q04806	366 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	ACF2	Q12168	779 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	UBA3	Q99344	299 aa		4.04	□□□□□ -1.76
SOF1	YLL011W	FKS3	Q04952	1785 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	TPK3	P05986	398 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	RAD7	P06779	565 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	DAL81	P21657	970 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	RPL5	P26321	297 aa	Known RBP	4.03	□□□□□ -1.76
SOF1	YLL011W	SKG6	P32900	734 aa	Predicted RBP	4.03	□□□□□ -1.76
SOF1	YLL011W	YCR041W	P37265	110 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	LYS1	P38998	373 aa	RIP-Chip data	4.03	□□□□□ -1.76	not detected
SOF1	YLL011W	SDS3	P40505	327 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	STB4	P50104	949 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	YIP1	P53039	248 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	MRPS17	Q03246	237 aa	Predicted RBP	4.03	□□□□□ -1.76
SOF1	YLL011W	NAT4	Q04751	285 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	RTN1	Q04947	295 aa	Known RBP	4.03	□□□□□ -1.76
SOF1	YLL011W	GLO2	Q05584	274 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	SMD2	Q06217	110 aa	Known RBP	4.03	□□□□□ -1.76
SOF1	YLL011W	TPO3	Q06451	622 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	ORT1	Q12375	292 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	AHC1	Q12433	566 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	YLR111W	Q12528	110 aa		4.03	□□□□□ -1.76
SOF1	YLL011W	TOM1	Q03280	3268 aa		4.02	□□□□□ -1.77
SOF1	YLL011W	MAS2	P11914	482 aa		4.02	□□□□□ -1.77
SOF1	YLL011W	FRS2	P15625	503 aa	Known RBP	4.02	□□□□□ -1.77
SOF1	YLL011W	PRP16	P15938	1071 aa	Predicted RBP	4.02	□□□□□ -1.77
SOF1	YLL011W	CDC43	P18898	376 aa		4.02	□□□□□ -1.77
SOF1	YLL011W	RVS161	P25343	265 aa	Known RBP	4.02	□□□□□ -1.77
SOF1	YLL011W	YCR007C	P25354	239 aa		4.02	□□□□□ -1.77
SOF1	YLL011W	RNQ1	P25367	405 aa		4.02	□□□□□ -1.77
SOF1	YLL011W	RME1	P32338	300 aa	Known RBP	4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 31.6 ms