RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	CTP1	P38152	299 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	MAL32	P38158	584 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	MED8	P38304	223 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	URA8	P38627	578 aa	Predicted RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	SPC97	P38863	823 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	SAS2	P40963	338 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	MIC19	P43594	170 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	HIT1	P46973	164 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	MAL12	P53341	584 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	BUD17	P53727	317 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	YDR222W	Q04925	415 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	NSE1	Q07913	336 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	DSE3	Q08729	430 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	DAS2	Q12084	232 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	TUS1	Q06412	1307 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	CDC8	P00572	216 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	ERG11	P10614	530 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	LAC1	P28496	418 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	ATP11	P32453	318 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	SPT10	P35208	640 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	PRS4	P38063	326 aa	Predicted RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	OLA1	P38219	394 aa	Known RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	TCM62	P38228	572 aa	Known RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	SAP1	P39955	897 aa	Known RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	GTF1	P53260	183 aa	Predicted RBP	3.52	□□□□□ -1.85
NUP85	YJR042W	YGR127W	P53275	312 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	BIO4	P53630	237 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	YML053C	Q04978	212 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	PDR8	Q06149	701 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	PAM18	Q07914	168 aa		3.52	□□□□□ -1.85
NUP85	YJR042W	OPI3	P05375	206 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	SIR3	P06701	978 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	RPL12A	P0CX53	165 aa	Known RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	RPL12B	P0CX54	165 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	KAR4	P25583	335 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	PRO3	P32263	286 aa	Known RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	TOA2	P32774	122 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	RTC2	P38279	296 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	VHC1	P38329	1120 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	MRX5	P47007	382 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	BUL1	P48524	976 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	UBP8	P50102	471 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	PYK2	P52489	506 aa	Known RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	YNL146W	P53906	100 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	CDC14	Q00684	551 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	DIG1	Q03063	452 aa	Known RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	HRD3	Q05787	833 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	DUS4	Q06063	367 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	SPO77	Q06134	477 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	YOR365C	Q08844	703 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	MSH5	Q12175	901 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	BRR1	Q99177	341 aa	Predicted RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	IMA3	P0CW40	589 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	IMA4	P0CW41	589 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	PPZ1	P26570	692 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	EGD2	P38879	174 aa	Known RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	YFL040W	P43562	540 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	YJR079W	P47126	109 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	CWC23	P52868	283 aa	Predicted RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	MIG2	P53035	382 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	YIP4	P53093	235 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	VPS62	P53285	467 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	NOP19	P53317	196 aa	Predicted RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	IST1	P53843	298 aa	Predicted RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	CSM3	Q04659	317 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	YMR310C	Q04867	317 aa	Predicted RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	YMR034C	Q05131	434 aa	Predicted RBP	3.51	□□□□□ -1.85
NUP85	YJR042W	DCR2	Q05924	578 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	SFH1	Q06168	426 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	CDD1	Q06549	142 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	SYO1	Q07395	620 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	IMA2	Q08295	589 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	PEX27	Q08580	376 aa		3.51	□□□□□ -1.85
NUP85	YJR042W	RAD1	P06777	1100 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	RAD52	P06778	471 aa	Known RBP	3.5	□□□□□ -1.85
NUP85	YJR042W	SPS19	P32573	292 aa	Known RBP	3.5	□□□□□ -1.85
NUP85	YJR042W	GCG1	P32656	232 aa	Known RBP	3.5	□□□□□ -1.85
NUP85	YJR042W	PRP18	P33411	251 aa	Predicted RBP	3.5	□□□□□ -1.85
NUP85	YJR042W	MSN2	P33748	704 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	SPO23	P33757	523 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	CBT1	P36038	271 aa	Predicted RBP	3.5	□□□□□ -1.85
NUP85	YJR042W	RRN10	P38204	145 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	INM1	P38710	295 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	ERG28	P40030	148 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	PIG2	P40187	538 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	CDC1	P40986	491 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	UBC11	P52492	156 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	ERG26	P53199	349 aa	Known RBP	3.5	□□□□□ -1.85
NUP85	YJR042W	YPR003C	P53394	754 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	RSM23	Q01163	450 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	YMR209C	Q03648	457 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	BNA7	Q04066	261 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	ECM30	Q06673	1274 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	YOL075C	Q08234	1294 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	REX4	Q08237	289 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	BTS1	Q12051	335 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	RIO1	Q12196	484 aa	Known RBP	3.5	□□□□□ -1.85
NUP85	YJR042W	AI3	P03877	415 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	GAL4	P04386	881 aa		3.5	□□□□□ -1.85
NUP85	YJR042W	ISY1	P21374	235 aa	Predicted RBP	3.5	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms