RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	CSM1	P25651	190 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	NTG1	P31378	399 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	MSK1	P32048	576 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	COT1	P32798	439 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	MRP4	P32902	394 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	SKN1	P33336	771 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	YCR041W	P37265	110 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	OSH3	P38713	996 aa	Known RBP	1.36	□□□□□ -2.19
VPS55	YJR044C	LYS1	P38998	373 aa	RIP-Chip data	1.36	□□□□□ -2.19	RIP-Chip
VPS55	YJR044C	FAU1	P40099	211 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	SEC9	P40357	651 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	AIM20	P40451	204 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	AGX1	P43567	385 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	1.36	□□□□□ -2.19	not detected
VPS55	YJR044C	TRS85	P46944	698 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	EFM3	P47163	339 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	SSN8	P47821	323 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	NUP84	P52891	726 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	YIP1	P53039	248 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	YGR168C	P53293	376 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	FRE4	P53746	719 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	YNL050C	P53952	270 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	SLG1	P54867	378 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	PRO2	P54885	456 aa	Known RBP	1.36	□□□□□ -2.19
VPS55	YJR044C	CAB5	Q03941	241 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	SMP3	Q04174	516 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	VPS20	Q04272	221 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	MRPL51	Q06090	140 aa	Predicted RBP	1.36	□□□□□ -2.19
VPS55	YJR044C	VPS74	Q06385	345 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	ARV1	Q06541	321 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	ASA1	Q06822	443 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	NDE2	Q07500	545 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	LDS2	Q08218	356 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	APC5	Q08683	685 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	RKM1	Q08961	583 aa	Predicted RBP	1.36	□□□□□ -2.19
VPS55	YJR044C	SLF1	Q12034	447 aa	Known RBP	1.36	□□□□□ -2.19
VPS55	YJR044C	BTS1	Q12051	335 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	RUD3	Q12234	484 aa	Known RBP	1.36	□□□□□ -2.19
VPS55	YJR044C	YOL107W	Q12239	342 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	RRP36	Q12481	300 aa	Predicted RBP	1.36	□□□□□ -2.19
VPS55	YJR044C	SPO24	Q3E752	67 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	SAC3	P46674	1301 aa		1.36	□□□□□ -2.19
VPS55	YJR044C	TDH1	P00360	332 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	TEF1	P02994	458 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	RPL24A	P04449	155 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	CAR2	P07991	424 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	UGA1	P17649	471 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	CDC42	P19073	191 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	DBP3	P20447	523 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	MRPL8	P22353	238 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	YSR3	P23501	404 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	DBR1	P24309	405 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	RNA14	P25298	677 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	YCR007C	P25354	239 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	YCR100C	P25606	316 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	BUB3	P26449	341 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	VMA5	P31412	392 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	SPR1	P32603	445 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	FRE1	P32791	686 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	RPC25	P35718	212 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	HSM3	P38348	480 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	MMS21	P38632	267 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	LIN1	P38852	340 aa	Predicted RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	YHR182W	P38870	785 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	CCT2	P39076	527 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	CSM2	P40465	213 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	SIM1	P40472	476 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	LYS12	P40495	371 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	LAM5	P43560	674 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	GTO1	P48239	356 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	KEL2	P50090	882 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	MND1	P53102	219 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	RPN14	P53196	417 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	GPI15	P53961	229 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	SPR6	Q01684	191 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	RLI1	Q03195	608 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	SLD5	Q03406	294 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	RSN1	Q03516	953 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	TAF12	Q03761	539 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	RNH1	Q04740	348 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	PAL1	Q05518	499 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	MDM30	Q05930	598 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	KAP95	Q06142	861 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	ECM7	Q06200	448 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	CUR1	Q06469	252 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	YLH47	Q06493	454 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	YPL199C	Q08954	240 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	SAM4	Q08985	325 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	NCE102	Q12207	173 aa	RIP-Chip data	1.35	□□□□□ -2.19	not detected
VPS55	YJR044C	PKH2	Q12236	1081 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	ATG34	Q12292	412 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	YRM1	Q12340	786 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	MED4	Q12343	284 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	YOR012W	Q12351	137 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	ERP3	Q12403	225 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	AHC1	Q12433	566 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	RMD5	Q12508	421 aa		1.35	□□□□□ -2.19
VPS55	YJR044C	DCP1	Q12517	231 aa	Predicted RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	HTZ1	Q12692	134 aa	Known RBP	1.35	□□□□□ -2.19
VPS55	YJR044C	YER078W-A	Q3E7A2	54 aa		1.35	□□□□□ -2.19

Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms