RNA–Protein interactions for RNA: YIL040W

APQ12, Transcript of Protein required for nuclear envelope morphology, yeast

Gene APQ12, Length 417 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
APQ12	YIL040W	YMR155W	Q03795	547 aa		0.51	□□□□□ -2.33
APQ12	YIL040W	PLB3	Q08108	686 aa		0.51	□□□□□ -2.33
APQ12	YIL040W	SRO7	Q12038	1033 aa		0.51	□□□□□ -2.33
APQ12	YIL040W	HIF1	Q12373	385 aa		0.51	□□□□□ -2.33
APQ12	YIL040W	NCA2	Q12374	616 aa		0.51	□□□□□ -2.33
APQ12	YIL040W	GCN4	P03069	281 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	RPS23A	P0CX29	145 aa	Known RBP	0.5	□□□□□ -2.33
APQ12	YIL040W	RPS23B	P0CX30	145 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	MSP1	P28737	362 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	DBF4	P32325	704 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	SPS19	P32573	292 aa	Known RBP	0.5	□□□□□ -2.33
APQ12	YIL040W	SKG6	P32900	734 aa	Predicted RBP	0.5	□□□□□ -2.33
APQ12	YIL040W	RBG1	P39729	369 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	NOP16	P40007	231 aa	Known RBP	0.5	□□□□□ -2.33
APQ12	YIL040W	RRT13	P40042	185 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	BAT2	P47176	376 aa	Known RBP	0.5	□□□□□ -2.33
APQ12	YIL040W	MIX17	Q03667	156 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	YHC1	Q05900	231 aa	Known RBP	0.5	□□□□□ -2.33
APQ12	YIL040W	YLR177W	Q06251	628 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	BUG1	Q12191	341 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	FRE8	Q12209	686 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	MCT1	Q12283	360 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	SFM1	Q12314	213 aa		0.5	□□□□□ -2.33
APQ12	YIL040W	IMA3	P0CW40	589 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	IMA4	P0CW41	589 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	GEX1	P25596	615 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	HXT3	P32466	567 aa	Known RBP	0.49	□□□□□ -2.33
APQ12	YIL040W	RAD23	P32628	398 aa	Known RBP	0.49	□□□□□ -2.33
APQ12	YIL040W	DBP7	P36120	742 aa	Known RBP	0.49	□□□□□ -2.33
APQ12	YIL040W	YBL081W	P38180	368 aa	Known RBP	0.49	□□□□□ -2.33
APQ12	YIL040W	UFE1	P41834	346 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	TRF5	P48561	642 aa	Known RBP	0.49	□□□□□ -2.33
APQ12	YIL040W	YGL088W	P53151	121 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	RNH201	P53942	307 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	VAC7	P53950	1165 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	STD1	Q02794	444 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	MSC3	Q05812	728 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	VTA1	Q06263	330 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	CDD1	Q06549	142 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	ASA1	Q06822	443 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	SIL1	Q08199	421 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	IMA2	Q08295	589 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	VAM3	Q12241	283 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	HMS1	Q12398	434 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	PCL9	Q12477	304 aa		0.49	□□□□□ -2.33
APQ12	YIL040W	POM152	P39685	1337 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	0.48	□□□□□ -2.33	RIP-Chip
APQ12	YIL040W	MIG1	P27705	504 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	RRN10	P38204	145 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	OTU2	P38747	307 aa	Known RBP	0.48	□□□□□ -2.33
APQ12	YIL040W	MET18	P40469	1032 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	KEG1	P43614	200 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	MNN5	P46982	586 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	JJJ1	P53863	590 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	MMT1	Q03218	510 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	COG4	Q06096	861 aa		0.48	□□□□□ -2.33
APQ12	YIL040W	RPL3	P14126	387 aa	Known RBP	0.47	□□□□□ -2.33
APQ12	YIL040W	AAC3	P18238	307 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	PWP2	P25635	923 aa	Known RBP	0.47	□□□□□ -2.33
APQ12	YIL040W	GPI10	P30777	616 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	MCM10	P32354	571 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	NIP1	P32497	812 aa	Known RBP	0.47	□□□□□ -2.33
APQ12	YIL040W	SPO23	P33757	523 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	VPS24	P36095	224 aa	Known RBP	0.47	□□□□□ -2.33
APQ12	YIL040W	ECM8	P38246	354 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	TPM2	P40414	161 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	MNP1	P53163	194 aa	Predicted RBP	0.47	□□□□□ -2.33
APQ12	YIL040W	REX2	P54964	269 aa	Known RBP	0.47	□□□□□ -2.33
APQ12	YIL040W	SED5	Q01590	340 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	YPL113C	Q02961	396 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	RRP45	Q05636	305 aa	Known RBP	0.47	□□□□□ -2.33
APQ12	YIL040W	YOR376W	Q08900	122 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	ENT1	Q12518	454 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	YAL067W-A	Q8TGK6	75 aa		0.47	□□□□□ -2.33
APQ12	YIL040W	RPS18A	P0CX55	146 aa	Known RBP	0.46	□□□□□ -2.34
APQ12	YIL040W	RPS18B	P0CX56	146 aa	Predicted RBP	0.46	□□□□□ -2.34
APQ12	YIL040W	CUP2	P15315	225 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	CLB1	P24868	471 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	LDS1	P31379	325 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	SSH4	P32343	579 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	YKR032W	P36127	104 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	YBR241C	P38142	488 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	SHE1	P38200	338 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	ECM14	P38836	430 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	BDH1	P39714	382 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	VHS2	P40463	436 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	SPO22	P40511	975 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	CTK3	P46963	296 aa	Predicted RBP	0.46	□□□□□ -2.34
APQ12	YIL040W	ASN2	P49090	572 aa	Known RBP	0.46	□□□□□ -2.34
APQ12	YIL040W	HSH155	P49955	971 aa	Known RBP	0.46	□□□□□ -2.34
APQ12	YIL040W	SHE4	P51534	789 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	RMI1	Q02685	241 aa		0.46	□□□□□ -2.34
APQ12	YIL040W	SNT309	Q06091	175 aa	Predicted RBP	0.46	□□□□□ -2.34
APQ12	YIL040W	STE2	D6VTK4	431 aa		0.45	□□□□□ -2.34
APQ12	YIL040W	ADH3	P07246	375 aa	Known RBP	0.45	□□□□□ -2.34
APQ12	YIL040W	ATP1	P07251	545 aa	Known RBP	0.45	□□□□□ -2.34
APQ12	YIL040W	SSC1	P0CS90	654 aa	Known RBP	0.45	□□□□□ -2.34
APQ12	YIL040W	UNG1	P12887	359 aa		0.45	□□□□□ -2.34
APQ12	YIL040W	CLC1	P17891	233 aa		0.45	□□□□□ -2.34
APQ12	YIL040W	COS5	P47187	383 aa		0.45	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms