RNA–Protein interactions for RNA: YNL138W-A

YSF3, Transcript of Component of the SF3b subcomplex of the U2 snRNP, yeastyeast

Gene YSF3, Length 258 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YSF3YNL138W-A RBS1Q05672 457 aaKnown RBP3.27□□□□□ -1.89
YSF3YNL138W-A RPN8Q08723 338 aaKnown RBP3.27□□□□□ -1.89
YSF3YNL138W-A SAM4Q08985 325 aaKnown RBP3.27□□□□□ -1.89
YSF3YNL138W-A RIM20Q12033 661 aa3.27□□□□□ -1.89
YSF3YNL138W-A PPT2Q12036 173 aa3.27□□□□□ -1.89
YSF3YNL138W-A LSP1Q12230 341 aaKnown RBP3.27□□□□□ -1.89
YSF3YNL138W-A SEC39Q12745 709 aa3.27□□□□□ -1.89
YSF3YNL138W-A HEM2P05373 342 aa3.26□□□□□ -1.89
YSF3YNL138W-A RPL20AP0CX23 172 aaKnown RBP3.26□□□□□ -1.89
YSF3YNL138W-A RPL20BP0CX24 172 aaPredicted RBP3.26□□□□□ -1.89
YSF3YNL138W-A ASP3-2P0CX77 362 aa3.26□□□□□ -1.89
YSF3YNL138W-A ASP3-3P0CX78 362 aa3.26□□□□□ -1.89
YSF3YNL138W-A ASP3-4P0CX79 362 aa3.26□□□□□ -1.89
YSF3YNL138W-A ASP3-1P0CZ17 362 aa3.26□□□□□ -1.89
YSF3YNL138W-A SEC63P14906 663 aa3.26□□□□□ -1.89
YSF3YNL138W-A GLK1P17709 500 aaKnown RBP3.26□□□□□ -1.89
YSF3YNL138W-A BEM1P29366 551 aa3.26□□□□□ -1.89
YSF3YNL138W-A ATP11P32453 318 aa3.26□□□□□ -1.89
YSF3YNL138W-A PMU1P36069 295 aa3.26□□□□□ -1.89
YSF3YNL138W-A MRPL40P36534 297 aa3.26□□□□□ -1.89
YSF3YNL138W-A SHO1P40073 367 aa3.26□□□□□ -1.89
YSF3YNL138W-A SER33P40510 469 aa3.26□□□□□ -1.89
YSF3YNL138W-A IRC6P43615 237 aa3.26□□□□□ -1.89
YSF3YNL138W-A ROK1P45818 564 aaPredicted RBP3.26□□□□□ -1.89
YSF3YNL138W-A YDL186WP48568 277 aa3.26□□□□□ -1.89
YSF3YNL138W-A COS10P52924 374 aa3.26□□□□□ -1.89
YSF3YNL138W-A TWF1P53250 332 aa3.26□□□□□ -1.89
YSF3YNL138W-A RET3P53600 189 aa3.26□□□□□ -1.89
YSF3YNL138W-A NOP13P53883 403 aaKnown RBP RIP-Chip data3.26□□□□□ -1.89not detected
YSF3YNL138W-A HIS4P00815 799 aaKnown RBP3.25□□□□□ -1.89
YSF3YNL138W-A CWP1P28319 239 aa3.25□□□□□ -1.89
YSF3YNL138W-A FHL1P39521 936 aa3.25□□□□□ -1.89
YSF3YNL138W-A SYG1P40528 902 aa3.25□□□□□ -1.89
YSF3YNL138W-A DSN1P40568 576 aa3.25□□□□□ -1.89
YSF3YNL138W-A POP1P41812 875 aa3.25□□□□□ -1.89
YSF3YNL138W-A AIM23P47015 356 aa3.25□□□□□ -1.89
YSF3YNL138W-A BIR1P47134 954 aa3.25□□□□□ -1.89
YSF3YNL138W-A JJJ1P53863 590 aa3.25□□□□□ -1.89
YSF3YNL138W-A MRPL19P53875 158 aa3.25□□□□□ -1.89
YSF3YNL138W-A VHS1Q03785 461 aa3.25□□□□□ -1.89
YSF3YNL138W-A TSR2Q06672 205 aaKnown RBP3.25□□□□□ -1.89
YSF3YNL138W-A TSR1Q07381 788 aaKnown RBP3.25□□□□□ -1.89
YSF3YNL138W-A ATG29Q12092 213 aa3.25□□□□□ -1.89
YSF3YNL138W-A YRA1Q12159 226 aaKnown RBP3.25□□□□□ -1.89
YSF3YNL138W-A CKA1P15790 372 aa3.24□□□□□ -1.89
YSF3YNL138W-A RPC53P25441 422 aa3.24□□□□□ -1.89
YSF3YNL138W-A CIN8P27895 1000 aa3.24□□□□□ -1.89
YSF3YNL138W-A CMC1P36064 111 aa3.24□□□□□ -1.89
YSF3YNL138W-A JNM1P36224 373 aa3.24□□□□□ -1.89
YSF3YNL138W-A PIM1P36775 1133 aa3.24□□□□□ -1.89
YSF3YNL138W-A SHE3P38272 425 aaKnown RBP3.24□□□□□ -1.89
YSF3YNL138W-A YHR218WP38899 603 aa3.24□□□□□ -1.89
YSF3YNL138W-A HAT2P39984 401 aa3.24□□□□□ -1.89
YSF3YNL138W-A ALG8P40351 577 aa3.24□□□□□ -1.89
YSF3YNL138W-A SHE10P53075 577 aa3.24□□□□□ -1.89
YSF3YNL138W-A YGL108CP53139 140 aa3.24□□□□□ -1.89
YSF3YNL138W-A WSC2P53832 503 aa3.24□□□□□ -1.89
YSF3YNL138W-A KTR5P53966 522 aaPredicted RBP3.24□□□□□ -1.89
YSF3YNL138W-A YPL113CQ02961 396 aa3.24□□□□□ -1.89
YSF3YNL138W-A FUS2Q05670 677 aa3.24□□□□□ -1.89
YSF3YNL138W-A VPS74Q06385 345 aa3.24□□□□□ -1.89
YSF3YNL138W-A YLH47Q06493 454 aa3.24□□□□□ -1.89
YSF3YNL138W-A TMS1Q12116 473 aa3.24□□□□□ -1.89
YSF3YNL138W-A YOR097CQ12274 175 aaPredicted RBP3.24□□□□□ -1.89
YSF3YNL138W-A ARF2P19146 181 aaKnown RBP3.23□□□□□ -1.89
YSF3YNL138W-A EXO70P19658 623 aa3.23□□□□□ -1.89
YSF3YNL138W-A ROX1P25042 368 aa3.23□□□□□ -1.89
YSF3YNL138W-A BUB3P26449 341 aa3.23□□□□□ -1.89
YSF3YNL138W-A FUN19P28003 413 aaPredicted RBP3.23□□□□□ -1.89
YSF3YNL138W-A YSC83P32792 385 aa3.23□□□□□ -1.89
YSF3YNL138W-A MFT1P33441 392 aaKnown RBP3.23□□□□□ -1.89
YSF3YNL138W-A TUL1P36096 758 aa3.23□□□□□ -1.89
YSF3YNL138W-A UFE1P41834 346 aa3.23□□□□□ -1.89
YSF3YNL138W-A HXT14P42833 540 aa3.23□□□□□ -1.89
YSF3YNL138W-A GWT1P47026 490 aa3.23□□□□□ -1.89
YSF3YNL138W-A OCA1P50946 238 aaPredicted RBP3.23□□□□□ -1.89
YSF3YNL138W-A PIR3Q03180 325 aa3.23□□□□□ -1.89
YSF3YNL138W-A RTN1Q04947 295 aaKnown RBP3.23□□□□□ -1.89
YSF3YNL138W-A YOL024WQ08172 172 aa3.23□□□□□ -1.89
YSF3YNL138W-A SGT2Q12118 346 aaKnown RBP3.23□□□□□ -1.89
YSF3YNL138W-A GLE1Q12315 538 aa3.23□□□□□ -1.89
YSF3YNL138W-A CHS1P08004 1131 aa3.22□□□□□ -1.89
YSF3YNL138W-A LDB16P25587 256 aa3.22□□□□□ -1.89
YSF3YNL138W-A SEC66P33754 206 aa3.22□□□□□ -1.89
YSF3YNL138W-A SIP3P38717 1229 aa3.22□□□□□ -1.89
YSF3YNL138W-A SMF1P38925 575 aa3.22□□□□□ -1.89
YSF3YNL138W-A FAU1P40099 211 aa3.22□□□□□ -1.89
YSF3YNL138W-A SHQ1P40486 507 aaPredicted RBP3.22□□□□□ -1.89
YSF3YNL138W-A ELP2P42935 788 aa3.22□□□□□ -1.89
YSF3YNL138W-A YLL032CQ07834 825 aaKnown RBP RIP-Chip data3.22□□□□□ -1.89not detected
YSF3YNL138W-A BRR1Q99177 341 aaPredicted RBP3.22□□□□□ -1.89
YSF3YNL138W-A STT4P37297 1900 aa3.21□□□□□ -1.9
YSF3YNL138W-A ATR1P13090 542 aa3.21□□□□□ -1.9
YSF3YNL138W-A THR4P16120 514 aaKnown RBP3.21□□□□□ -1.9
YSF3YNL138W-A SPB1P25582 841 aaPredicted RBP3.21□□□□□ -1.9
YSF3YNL138W-A CPR3P25719 182 aa3.21□□□□□ -1.9
YSF3YNL138W-A AFG1P32317 509 aa3.21□□□□□ -1.9
YSF3YNL138W-A SGE1P33335 543 aa3.21□□□□□ -1.9
YSF3YNL138W-A FRE2P36033 711 aa3.21□□□□□ -1.9
YSF3YNL138W-A THI2P38141 450 aa3.21□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms